Protein Info for ABZR87_RS03490 in Ralstonia sp. UNC404CL21Col

Annotation: indolepyruvate ferredoxin oxidoreductase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1186 transmembrane" amino acids 744 to 761 (18 residues), see Phobius details PF02775: TPP_enzyme_C" amino acids 477 to 626 (150 residues), 23.7 bits, see alignment E=5.6e-09 PF01558: POR" amino acids 750 to 936 (187 residues), 70.9 bits, see alignment E=2.3e-23 PF20169: DUF6537" amino acids 965 to 1170 (206 residues), 229.1 bits, see alignment E=7.9e-72

Best Hits

Predicted SEED Role

"Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits" in subsystem Aromatic amino acid interconversions with aryl acids

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1186 amino acids)

>ABZR87_RS03490 indolepyruvate ferredoxin oxidoreductase family protein (Ralstonia sp. UNC404CL21Col)
MNAPLNDALRRALETVSLDDKYTLERGRIYISGTQALVRLPMLQQERDRAAGLNTAGFIS
GYRGSPLGALDQALWKAKKHLAGHNIVFQAGLNEDLAATAVWGSQQVNLYPNAKFSGVFG
MWYGKGPGVDRTIDVFKHANSAGSSAHGGVLVLAGDDHAAKSSTLAHQSEHVFKAAGIPV
LYPSNVQEYLDYGLHGWAMSRYSGLWVSMKCVTDVVESSASVDVDPHRAQIILPEDFVMP
QGGLNIRWPDPPLVQEARLLDYKWYAGLSYVRANKLDRVVLDSPQARFGIMTAGKAYLDV
RQALVDLGLDEDTCRRIGIRLYKVGCVWPLEAHGARAFAEGLQEILVVEEKRQILEYQLK
EELYNYRDDVRPRVYGKFDEKDNAGGEWSVPMANWLLPAHYELSPALIARAIATRLEKFE
LPSDVRARIASRIAIIDAKEKALAKPRITAERKPWFCSGCPHNTSTNVPEGSRALAGIGC
HYMTVWMDRRTDTFSQMGGEGVAWIGQMPFSGDQHVFANLGDGTYYHSGLLAIRASIAAK
VNITYKILYNDAVAMTGGQPVDGPLSVPQIAAQVYAEGTSRIVIVTDEPEKYNAAIKLPE
GVTVHHRDRLDAIQRELREVQGTSVLIYDQTCATEKRRRRKRGTMADPARRAFINDAVCE
GCGDCSVKSNCLSVEPLETELGTKRKINQSSCNKDFSCVNGFCPSFVTAEGAQVRKPESH
GVSMDGLPLLPHPELPAIHRAYGVLVTGVGGTGVVTIGGLLGMAAHIEGKGVTVLDMAGL
AQKGGAVLSHVQIGERPDSIHATRIAMGEADLVIGCDAIVSASDEVLSKVQHGQTRAIIN
STASPTADFIKNPNWRFPGSSAEADIRAAVGDACAFEDANTLAVRLLGDAIFTNPLVLGF
AWQKGWVPLTHDALIRAIELNGVAVEKNKTAFEWGRHLAQDREAVLKLAGDAPRAKADVI
ALPSLDTLIARRVDLLTAYQNAAYAAEFRAVVERVRAAEAAVVGAGQPLAFTEAVVRNLS
KLMAYKDEYEVARLYTDPAFLDKLRAQFEGEPGRDYQLNFWLAPPMTAKRDEKGHLVKQR
FGPNTMRIFKVLAKLKGLRGTALDIFGKTEERRTERALIGEYRALVDELVKGLTAQKLAQ
AVELARLPEDIRGFGHVKEANLAAARIRWNKLLAQWRDPAAAQRAA