Protein Info for ABZR87_RS03330 in Ralstonia sp. UNC404CL21Col

Annotation: MarR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF01047: MarR" amino acids 38 to 92 (55 residues), 33.4 bits, see alignment E=8.7e-12 PF12802: MarR_2" amino acids 40 to 91 (52 residues), 31 bits, see alignment E=5.8e-11 PF01638: HxlR" amino acids 41 to 108 (68 residues), 27.9 bits, see alignment E=4.3e-10 PF13412: HTH_24" amino acids 42 to 81 (40 residues), 23.9 bits, see alignment E=6.1e-09 PF01022: HTH_5" amino acids 42 to 81 (40 residues), 22.9 bits, see alignment E=1.6e-08

Best Hits

KEGG orthology group: None (inferred from 54% identity to mlo:mlr8294)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (155 amino acids)

>ABZR87_RS03330 MarR family transcriptional regulator (Ralstonia sp. UNC404CL21Col)
MKPKQAHGIPVGFLLAQTAKTTARAFDDALQERGGSLPMWLILKALMAGEHRTQAELAAT
VGVQGPTLTHHLNGMEKDGLLMRSPLPDNRRVHQVALTDAGRALFFKLRDAAIAYDARLR
AGIDAADLERFRVVLQRMSANVESAAGADEDNAAG