Protein Info for ABZR87_RS02380 in Ralstonia sp. UNC404CL21Col

Annotation: cytochrome bc complex cytochrome b subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 transmembrane" amino acids 41 to 65 (25 residues), see Phobius details amino acids 72 to 89 (18 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 132 to 154 (23 residues), see Phobius details amino acids 160 to 181 (22 residues), see Phobius details amino acids 199 to 222 (24 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 299 to 307 (9 residues), see Phobius details amino acids 322 to 339 (18 residues), see Phobius details amino acids 346 to 363 (18 residues), see Phobius details amino acids 369 to 388 (20 residues), see Phobius details amino acids 400 to 421 (22 residues), see Phobius details amino acids 427 to 449 (23 residues), see Phobius details PF00033: Cytochrome_B" amino acids 31 to 226 (196 residues), 213.2 bits, see alignment E=4.5e-67 PF13631: Cytochrom_B_N_2" amino acids 108 to 279 (172 residues), 153.5 bits, see alignment E=8.5e-49 PF00032: Cytochrom_B_C" amino acids 292 to 440 (149 residues), 114.4 bits, see alignment E=4.1e-37

Best Hits

KEGG orthology group: K00412, ubiquinol-cytochrome c reductase cytochrome b subunit [EC: 1.10.2.2] (inferred from 99% identity to rpf:Rpic12D_2858)

Predicted SEED Role

"Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)" in subsystem Ubiquinone Menaquinone-cytochrome c reductase complexes (EC 1.10.2.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.10.2.2

Use Curated BLAST to search for 1.10.2.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (467 amino acids)

>ABZR87_RS02380 cytochrome bc complex cytochrome b subunit (Ralstonia sp. UNC404CL21Col)
MMAEKKVETTGLLGWIDARFPASELWKAHLSEYYAPKNFNFWYFFGSLALLVLVIQIVTG
IFLVMNYKPDGTLNAAGIPVAYASVEFIMREVPWGWLVRYMHSTGASAFFIVVYLHMFRG
MLYGSYRKPRELVWIFGCLIFLCLMAEAFMGYLLPWGQMSYWGAQVIVNLFSAIPLIGPD
LSLWIRGDYVVSDATLNRFFSFHVIAVPLVLLGLVVAHIIALHEVGSNNPDGVEIKAKKD
ERGIPLDGIPFHPYYSVHDIVGVAVFLFIFSAIVFFAPEMGGYFLEANNFIPADSLKTPP
HIAPVWYFTPFYSMLRATTSDFLPWLWGFIAIMLGLLFVRSKSMKVKGVAVAVAVILALG
FAFIDAKFWGVVVMGGSVVIFFFLPWLDQSPVKSIRYRPGFHKTLLIVFVIAFAVLGYLG
IQPPSPVGSIVSQIGTILYFAFFLAMPIWSQIGTFKPVPERVTFTPH