Protein Info for ABZR87_RS02105 in Ralstonia sp. UNC404CL21Col

Annotation: hydroxyphenylacetyl-CoA thioesterase PaaI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 TIGR00369: uncharacterized domain 1" amino acids 28 to 140 (113 residues), 92 bits, see alignment E=2.8e-30 TIGR02286: phenylacetic acid degradation protein PaaD" amino acids 31 to 141 (111 residues), 157.2 bits, see alignment E=1.6e-50 PF14539: DUF4442" amino acids 32 to 134 (103 residues), 36.9 bits, see alignment E=3.9e-13 PF03061: 4HBT" amino acids 60 to 132 (73 residues), 51.7 bits, see alignment E=9.3e-18

Best Hits

Swiss-Prot: 44% identical to PAAI_ECOLI: Acyl-coenzyme A thioesterase PaaI (paaI) from Escherichia coli (strain K12)

KEGG orthology group: K02614, phenylacetic acid degradation protein (inferred from 97% identity to rpi:Rpic_3116)

MetaCyc: 44% identical to phenylacetyl-CoA thioesterase (Escherichia coli K-12 substr. MG1655)
3.1.2.-; 3.1.2.-

Predicted SEED Role

"Phenylacetic acid degradation protein PaaD, thioesterase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (155 amino acids)

>ABZR87_RS02105 hydroxyphenylacetyl-CoA thioesterase PaaI (Ralstonia sp. UNC404CL21Col)
MSVTETTLHDAQALAEAACKSMFDADACTRWLGMRVEAVAPGYARLSMAVRPEFLNGHRT
CHGGLIFTLADSAFAFACNSHNHNTVAAGCSVEFLRPAHGGETLTAEATEQVLSGRHGIY
DVRVTNQAGEVVAMFRGKSAQIRGQVIPVPGSPES