Protein Info for ABZR87_RS01770 in Ralstonia sp. UNC404CL21Col

Annotation: signal recognition particle protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 TIGR00959: signal recognition particle protein" amino acids 3 to 444 (442 residues), 567.1 bits, see alignment E=1.2e-174 PF02881: SRP54_N" amino acids 5 to 82 (78 residues), 67.1 bits, see alignment E=3.9e-22 PF06414: Zeta_toxin" amino acids 113 to 157 (45 residues), 24 bits, see alignment 6.8e-09 PF00448: SRP54" amino acids 114 to 310 (197 residues), 242.5 bits, see alignment E=8.9e-76 PF13401: AAA_22" amino acids 115 to 224 (110 residues), 29 bits, see alignment E=3.5e-10 PF01656: CbiA" amino acids 121 to 269 (149 residues), 25.4 bits, see alignment E=3.5e-09 PF02978: SRP_SPB" amino acids 343 to 442 (100 residues), 113.8 bits, see alignment E=1.2e-36

Best Hits

KEGG orthology group: K03106, signal recognition particle subunit SRP54 (inferred from 99% identity to rpi:Rpic_3056)

Predicted SEED Role

"Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)" in subsystem Two cell division clusters relating to chromosome partitioning or Universal GTPases (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>ABZR87_RS01770 signal recognition particle protein (Ralstonia sp. UNC404CL21Col)
MLDNLTQRLARVVKTMRGEARLTEANTAEMLREVRMALLEADVALPVVREFIARVKEKAL
GEDVITSLSPGQALVGIVQRELTAIIGGQEALEGVGSNIMGGRAAELNLNVTPPAIILMA
GLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSQPDQ
KPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHARLKPAETLFVVDAMLG
QDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGKPIKFVGVAEKLDGLEPFY
PDRMAQRILGMGDILALVEEAQRGVDMEEAQKLAAKIKKTGGFDLEDFKAQIGQMKKMGG
LGSLMDKLPAQLAQQAQGANMDQAEKQVRRMEGIINSMTAAERAKPELIKASRKRRIAAG
AGVQVQEVNRLLNQFEQMQGMMKKLKGGGMMKMMRAMGGMKGGMKGLFGGR