Protein Info for ABZR87_RS01525 in Ralstonia sp. UNC404CL21Col

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 30 to 51 (22 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 188 to 210 (23 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 320 to 339 (20 residues), see Phobius details amino acids 345 to 365 (21 residues), see Phobius details amino acids 373 to 394 (22 residues), see Phobius details amino acids 412 to 434 (23 residues), see Phobius details PF07690: MFS_1" amino acids 34 to 396 (363 residues), 143.5 bits, see alignment E=8e-46

Best Hits

Swiss-Prot: 58% identical to ABAQ_ACIBT: Quinolone resistance transporter (abaQ) from Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)

KEGG orthology group: None (inferred from 79% identity to cti:RALTA_B0227)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (441 amino acids)

>ABZR87_RS01525 MFS transporter (Ralstonia sp. UNC404CL21Col)
MDISQTAGAVPASADASEEQRIIRLLTRKLMPFLALIYVVAYIDRSVVGFAKLHMNAAVG
IGDAAYGLGAGLFFIGYFLCEVPSNLALERFGARRWFARILFTWGVITMAMALVSGPVSF
YVLRFLLGAAEAGLYPGILYFLTKWFPMRHRARIVGLLVLAQPVALIITGPMAGWLLSVP
GLFGMSSWQTLFVVSGLPATLLCLPTLRILPESPAHARWLPAADRVWIERQLAADQAAYA
LKSHGSPLKALKDVRVLMLALLFLPFPLSIYGLSLWLPTIIKQFGVSDVATGLLSAVPYL
FAVLGLYLVPRHSDRTGERYWHIAILSALAALGMAASAWVEAPALQLACLCLFAFCAYAI
QAVLWTLPGQFLTGTSAAVGIATINSLSNLGGYLGPYGMGIIKNATGSLSAGLYFLAAAL
AFAVVMTFIVRAVLGARQHLS