Protein Info for ABZR87_RS01390 in Ralstonia sp. UNC404CL21Col

Annotation: CopD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 140 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 48 to 68 (21 residues), see Phobius details amino acids 80 to 102 (23 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details PF03653: UPF0093" amino acids 2 to 140 (139 residues), 142.5 bits, see alignment E=6.4e-46

Best Hits

KEGG orthology group: K08973, putative membrane protein (inferred from 99% identity to rpi:Rpic_2979)

Predicted SEED Role

"Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-)" (EC 1.3.-.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.3.-.-

Use Curated BLAST to search for 1.3.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (140 amino acids)

>ABZR87_RS01390 CopD family protein (Ralstonia sp. UNC404CL21Col)
MLWVKAFHIVFIASWFAGLFYLPRIFVNLAMETERAAITRLLIMARKLFRFTTMLAIVAI
LLGLWLFLGYRIGLYPPNGWMHAKLALVLVTIGYHHGCGVLLRKFEAGANKRSHKFYRWF
NELPVLLLLAITILVVVKPF