Protein Info for ABZR87_RS00820 in Ralstonia sp. UNC404CL21Col

Annotation: YajQ family cyclic di-GMP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 PF04461: DUF520" amino acids 2 to 160 (159 residues), 216.5 bits, see alignment E=1.2e-68

Best Hits

Swiss-Prot: 99% identical to Y2826_RALPJ: UPF0234 protein Rpic_2826 (Rpic_2826) from Ralstonia pickettii (strain 12J)

KEGG orthology group: K09767, hypothetical protein (inferred from 100% identity to rpf:Rpic12D_2420)

Predicted SEED Role

"FIG001943: hypothetical protein YajQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (161 amino acids)

>ABZR87_RS00820 YajQ family cyclic di-GMP-binding protein (Ralstonia sp. UNC404CL21Col)
MPSFDVVCEANMVEVKNAVEQANKEISTRFDFKGSDSRVEHKEQELTLFADDDFKIGQVN
DVLMNKLAKRNVDVRFLDYQDKQKIGGDKMKQVVKIKKGVSGDLAKKIVKTIKDSKIKVQ
ASIQGDAVRVTGAKRDDLQSVIAMLRKDVSDTPLDFNNFRD