Protein Info for ABZR87_RS00795 in Ralstonia sp. UNC404CL21Col

Annotation: site-specific tyrosine recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 PF02899: Phage_int_SAM_1" amino acids 22 to 103 (82 residues), 61.7 bits, see alignment E=6.4e-21 TIGR02225: tyrosine recombinase XerD" amino acids 23 to 310 (288 residues), 366.6 bits, see alignment E=4.4e-114 PF00589: Phage_integrase" amino acids 125 to 298 (174 residues), 173.8 bits, see alignment E=2.9e-55

Best Hits

Swiss-Prot: 90% identical to XERD_RALSO: Tyrosine recombinase XerD (xerD) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K04763, integrase/recombinase XerD (inferred from 98% identity to rpi:Rpic_2821)

Predicted SEED Role

"Tyrosine recombinase XerD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (311 amino acids)

>ABZR87_RS00795 site-specific tyrosine recombinase XerD (Ralstonia sp. UNC404CL21Col)
MRKAARKDAEAPSLPSQSADAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAERSKS
IAETEDGDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVVSTDPSRLLPTAKQPP
RFPKTLSETQVEALINAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVV
RVVGGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFWYL
IKRYALLADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERL
RTLHAQHHPRG