Protein Info for ABZR87_RS00255 in Ralstonia sp. UNC404CL21Col
Annotation: TIGR03571 family LLM class oxidoreductase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 89% identity to bcn:Bcen_5451)Predicted SEED Role
"Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (314 amino acids)
>ABZR87_RS00255 TIGR03571 family LLM class oxidoreductase (Ralstonia sp. UNC404CL21Col) MSPALDKLTHGGFSIGIELPLDNDWSPAGDAKRLRDGRRHGVPDLEHHATLAKLADSLGF RALWVRDVPVYDPAFGDAAQVFEVFSYLGYLAGITRNILLGTAAVVLPLREPLLTLKSAA TIQELSGGRLLLGVASGDRPVEYPLFGRDFESRGANFRDQIALLRDGARDRLPAGLEVLP AVRTPVPLLVAGLAQQTPAWIGAHMDGCLAYPGTPADHAQRAAAWRAVAGDKPYVSFIHL DLADDPHEPLQRHRFGARAGRIALSEELAAMREAGVQHIGLHFRRNRRPLAETFAEIAAE VLPAFHSSALEYTA