Protein Info for ABZR87_RS00155 in Ralstonia sp. UNC404CL21Col

Annotation: LPS export ABC transporter permease LptF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 48 to 76 (29 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details amino acids 266 to 289 (24 residues), see Phobius details amino acids 296 to 317 (22 residues), see Phobius details amino acids 328 to 348 (21 residues), see Phobius details TIGR04407: LPS export ABC transporter permease LptF" amino acids 2 to 347 (346 residues), 399.2 bits, see alignment E=6e-124 PF03739: LptF_LptG" amino acids 7 to 346 (340 residues), 181.2 bits, see alignment E=1.4e-57

Best Hits

KEGG orthology group: K07091, lipopolysaccharide export system permease protein (inferred from 99% identity to rpi:Rpic_2680)

Predicted SEED Role

"FIG000988: Predicted permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (372 amino acids)

>ABZR87_RS00155 LPS export ABC transporter permease LptF (Ralstonia sp. UNC404CL21Col)
MIFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEANPNDVLLLIGLATLGYL
AILLCATLFISVLLVLTRWYKDSEMVVWFTSGISLTDFIRPVLRFSLPFIVLVALLALFG
WPWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDNGMKHARNLFVANAE
QDKIGVAMAKTGEFKTMPNGDRFVVLDKGRRYEGTPGKLDYRIVEFDKYGVKVANKPPQA
DANLPTKSRSTKDLLANPTPENLGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRYTPMI
FAVLIYLTYSNLLNLSQAWVSQGKMNVFMAWWPIHLVAFICAVLLFRFRHYSAAGLKGIS
AVLGFAPKKAGA