Protein Info for ABZR87_RS00010 in Ralstonia sp. UNC404CL21Col

Annotation: translocation/assembly module TamB domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1304 transmembrane" amino acids 31 to 54 (24 residues), see Phobius details PF04357: TamB" amino acids 963 to 1304 (342 residues), 179.6 bits, see alignment E=1.2e-56

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 96% identity to rpi:Rpic_2596)

Predicted SEED Role

"tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)" (EC 6.3.4.19)

Isozymes

Compare fitness of predicted isozymes for: 6.3.4.19

Use Curated BLAST to search for 6.3.4.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1304 amino acids)

>ABZR87_RS00010 translocation/assembly module TamB domain-containing protein (Ralstonia sp. UNC404CL21Col)
MTMTDPQTPEPKQPEAPRSARTKRGWGHRTLRWLGGLIALVLVIVLALAGWLLWAIHSQS
GTAQLWSLATRFGNAYVSGKLEGGTVSEGLSLRDLHVRAGSTEVRIDHVEGRWALTRGPW
HAHFAYLRAGNVDVILHPTPPTPPSGPPNSLVLPLALDVDRLAVDRLAIRQGTSTTELKS
IAGSLHTDGTHHNVLLDGMETPAGKLAATLRMTGTRPYPLTGAATLATQFEVNGQKQDAA
VSAQLSGSLEALHIDATGTGAKLTAQALIDATPFGALPLSRAVVSAEHVNPRAFAPGAPE
ASLSIHADLRPDEQAKTLTVAGPIQIDNAQPGTLDKQKLPLQSLRAQVRLNENDQQLTGL
DVRLLGGAVLTGGADVQKGHGALRVDVRQLDLQALHASLEKTKLAGPITVDFAGGTQHVA
LDLAGGDMRAQAKAVLDAAQVAVESAQVSLGRSRLTLAGTLKHDDAQSFAFKGNLAEFDP
SRLAKVAKGRINAEFDARGTLGEPIDAAVKFAVRDSDYAGLPMTGDGNVHLRGERLLPSD
ARLDVAGNKASLRGSFGAAGDRMHVEIDAPQLARFQLGVSGAVTLSGDVSGTIKRPQVDA
TFRASQLAYEGNKIDTANGRAQIRDGIDGPLLFELTAQRVTGPSLSLREVHATLDGTRRA
HRFRADADGNVRNQPFKFALAGDGALTPGKDGDGWDGTISTLSAQGAPNLQLTAPVKLSV
APGRLMMGRADLTLDQTPIHIERVESAQGHVRSAGRVDGLQIARVLELVRTWTGQAPPVR
TDLVVDGQWDLDLGSAATGTARVTRRSGDLSINAGRGFTPLGLTEATVEARGEGMRLGLR
GTVQSTRVGNLYLDAGVGLVRDPGPGTLALMAPTSPLSGGLTINLPHLKSIGDLLGPDVA
TDGQLAASLTFAGTVGAPKVSGFLTGQDVEVALYDQGIRLTKGVVRVALDQNVVDLQEVV
FHGGDGTVRAQGRVQLGEANPNLAGSIVADKLQLFADPDRTLVLSGQARIANDNDRVAIT
GKFKVDRGLFDLPKDGAPSLGDDVVIVRRADAARNQAERGVKREEKPAGRFSPVVDVDVD
FGDNFRFKGAGADLSLGGQMHVHSEPLVPLRGTGTIYVRQGSTYEAFGRKLAIEQGVLNF
VGPINNPSFNITAMRRNQEVEAGVQVTGTVRQPRVKLVSEPNVPDEDKLSWLMFGYSASN
AGLGQQQAMSGAALGLLGNVAGKNVARRFGLDEFSIGPSTAGLTDPQVVSLGKAISERIT
VGYEQSLSTADSIVKLTWQFSRRWSVVARGGTINGASVLFNKRW