Protein Info for ABZR86_RS21805 in Dyella japonica UNC79MFTsu3.2

Annotation: preprotein translocase subunit SecY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 72 to 97 (26 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 152 to 174 (23 residues), see Phobius details amino acids 186 to 205 (20 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details amino acids 274 to 296 (23 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details amino acids 370 to 391 (22 residues), see Phobius details amino acids 397 to 418 (22 residues), see Phobius details TIGR00967: preprotein translocase, SecY subunit" amino acids 19 to 429 (411 residues), 409.6 bits, see alignment E=7.3e-127 PF00344: SecY" amino acids 74 to 416 (343 residues), 371.3 bits, see alignment E=2.1e-115

Best Hits

Swiss-Prot: 56% identical to SECY_PSEAE: Protein translocase subunit SecY (secY) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K03076, preprotein translocase subunit SecY (inferred from 67% identity to xcv:XCV1019)

Predicted SEED Role

"Preprotein translocase secY subunit (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2IY99 at UniProt or InterPro

Protein Sequence (441 amino acids)

>ABZR86_RS21805 preprotein translocase subunit SecY (Dyella japonica UNC79MFTsu3.2)
MAAAKGPSLGSLGKLTELRQRIFFVIGALIVFRLGSFIPVPGVNPEAMTSLIESGGGLMN
MFNMFSGGSLARFSVFALGVVPYISASIVVQMMGAVIPSLQALRKEGESGRRKMTTYTRF
GTVGLAAFQAFGIAVALQKQVANGGAPVVYTPGMGFIMASVVGLTAGTMFLMWLGEQITE
RGIGNGISLLIFAGIVAGLPGAVAHTLTMASNGELSVIKMILVVGLILAVTAFVVFMERA
QRQITVNYARRSGGQRAYMNQTSHLPLKINMSGVIPPIFASSLLMFPATAATWLTAGNQS
RWLQELTQALTPGEPLYDIVFAVLVITFAFFYTAIVFNSQETADNLKRSGALIPGIRPGR
STADYIDSVMTRLTGVGALYLVLVCLVPSFMQKAWHVPFYFGGTSLLIVVVVVMDFTAQV
QAHLVSHQYESLLKKANLRRN