Protein Info for ABZR86_RS21730 in Dyella japonica UNC79MFTsu3.2

Annotation: ribonuclease G

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 TIGR00757: ribonuclease, Rne/Rng family" amino acids 13 to 434 (422 residues), 506.6 bits, see alignment E=2.7e-156 PF00575: S1" amino acids 38 to 116 (79 residues), 25.6 bits, see alignment E=2e-09 PF10150: RNase_E_G" amino acids 131 to 401 (271 residues), 350 bits, see alignment E=1.5e-108 PF20833: RNase_E_G_Thio" amino acids 412 to 494 (83 residues), 36.6 bits, see alignment E=6.3e-13

Best Hits

Swiss-Prot: 54% identical to RNG_ECO57: Ribonuclease G (rng) from Escherichia coli O157:H7

KEGG orthology group: K08301, ribonuclease G [EC: 3.1.26.-] (inferred from 69% identity to xcb:XC_1507)

MetaCyc: 54% identical to RNase G (Escherichia coli K-12 substr. MG1655)
Ribonuclease E. [EC: 3.1.26.12]

Predicted SEED Role

"Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)" in subsystem Bacterial Cell Division or RNA processing and degradation, bacterial (EC 3.1.4.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.26.12, 3.1.4.-

Use Curated BLAST to search for 3.1.26.- or 3.1.26.12 or 3.1.4.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2IXC4 at UniProt or InterPro

Protein Sequence (497 amino acids)

>ABZR86_RS21730 ribonuclease G (Dyella japonica UNC79MFTsu3.2)
MSEEILINVTPRETRVGVVENGMLQEVHVERASRRGYVGNVYKGRVQRVMPGMQAVFVDI
GLERAAFLHASDIVRPPLPVVAEGAEAVVVPAGNGPTPSITELVHEGQEIVVQVVKDPIG
TKGARLSTHLSIPSRYLVLLPHARTLGISARIEDEAERQRLKEVMTSLIGENPLGYIVRT
NAEEQTAESLAFDVTYLGKVWRVVQENIAKSKVGERVYEELSLPLRSLRDMLNDDIEKVR
VDSRETYEKVVKFVHKFMPSLDDRVEHYSGERPIFDLYGVEDEIQRALKKEVPLKSGGYL
IVDQTEAMTTIDVNTGGYLGTRNLEETVYRTNLEAAQAAARQLRLRNLGGIIIIDFIDMT
DEEHKRQVLRMLEKGLQRDHAKTTVYPMSALGLVEMTRKRTTESLERQLCEPCPACGGRG
AVKTAETVTYEIFREITRAVRQFNAEKLLVMASPKVVGRILEEESVAVAELEEFISKSIR
FQAEEHYSQEQFDVVLL