Protein Info for ABZR86_RS21725 in Dyella japonica UNC79MFTsu3.2

Annotation: YhdP family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1288 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 1209 to 1232 (24 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 14 to 1261 (1248 residues), 727.7 bits, see alignment E=1.3e-222 PF13116: DUF3971" amino acids 500 to 776 (277 residues), 154 bits, see alignment E=6.8e-49 PF13502: AsmA_2" amino acids 1012 to 1253 (242 residues), 190.5 bits, see alignment E=3.6e-60

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2IW04 at UniProt or InterPro

Protein Sequence (1288 amino acids)

>ABZR86_RS21725 YhdP family protein (Dyella japonica UNC79MFTsu3.2)
MNVSVRQRLHRIARALGWVLGVSVISLAVLAGLIQLLLPTLASHPQWVAAQLSRLLERPV
SFASLEGRWEPSGPLFVMRNTVVAAGPGESALSIPETELKLDLGGWLMPARHLVNLRVRG
MQLDLARGKDGSWHVNGIGVAGGGERQNPSFGRLSVELWLRDLRLDIADETTGKHYALLA
RQLRVSRQGGRVRVGAILQREGVAGELRGAGNFREDGADGRLWIAGSKVDLRAFAAGIDL
GGYTVDSGNGTFASWLDWRDAKVVRNLTRLDLDGLALTNPAGHQARVASLHALGDMNKTA
QGLRVRWGADDGGALVLDVHNGADGHADEALIAARDLQLGALAPWAALKPELSPGMAQWL
GTGKPRGKLGQVALRWTRADGLASANVGFSGLGIDAVGKLPGIDRLDGVLRGDAGALSVE
LPPQATVLRFPRTFRKPFALSRLAGDIAAWHEDGDWHLGIEPLDFVGAGFGGQARGEIRL
PDAGGRPFLDLYAMLDHADMDAAKLFWPIDSMSPQAIEWLDRALVAGKIERSDMLVRGDL
KDWPFHANEGRFEARAELSGLSLDYGRNWPRAEGIDAVANFVNNSMLVEASGGESLGVKT
ERAVAVIPDLAHTVLDLNVHGSGSGASLMDFVKHSPIGSRQADTLNKLSLGGAGTFDFHL
SLPMNNAREFFLNGTTDLKDVDLNAPDWNLKLDKISGQASFDGHGFRAGALDTVFRGQPS
KLDIAIAGATGRPDTEFSARLSGRYGMAELVQGLSQLDWLKDVASGRSDTTVGFDIVRPD
TVANAAQLLTLDTNFAGMALDLPAPLKKSADASLPTHLALTLPVSGGDLQIALGQVMRQR
FRLPDDKRPLAASFAFGTRMPDTVPDKGIRVRGRAARMDVTGWVQRAVAGSSTGGPGLES
IDVSADQAELFGHPFPSMRIQAAPESGQLNVDVDSADIVGRFIVPTDDLDKRGVTARLQR
LYWPKTSGRSSDAKTNPGDPPKTDPANTGITPSSLPPFHLWVGDLRFGESRLGEARLETW
PTDRGLHIDQLRAQSRSVQINGSGDWDGTATSSRSHLRIDFAAENLGDMLGAFGFAGLFN
GGKTRAHLDATWPGAPSAMELANMDGKLGIQVTDGSIPEVAPGVGRLFGLVSLVELPRRL
TLDFGDVFGKGLAFDSITGDFVLADGNATTNNLSMRGPAAEINIKGRTGLRAKDYDQQAL
VIPHLGSSLPIVGAVVAGPLGAAAGFVAQGLLGRGLNRVASARYHIGGSWDKPDISLVEK
KNLSAAEAASSTAPAPLTAPAPASSSAR