Protein Info for ABZR86_RS21625 in Dyella japonica UNC79MFTsu3.2

Annotation: outer membrane protein assembly factor BamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 813 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 23 to 813 (791 residues), 806.8 bits, see alignment E=9.9e-247 PF07244: POTRA" amino acids 24 to 90 (67 residues), 25.9 bits, see alignment E=2.7e-09 amino acids 92 to 171 (80 residues), 49.7 bits, see alignment E=9.8e-17 amino acids 175 to 262 (88 residues), 60.4 bits, see alignment E=4.7e-20 amino acids 265 to 343 (79 residues), 57.3 bits, see alignment E=4.3e-19 amino acids 346 to 419 (74 residues), 56.1 bits, see alignment E=9.8e-19 PF01103: Omp85" amino acids 447 to 813 (367 residues), 211.1 bits, see alignment E=6e-66

Best Hits

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2IUQ4 at UniProt or InterPro

Protein Sequence (813 amino acids)

>ABZR86_RS21625 outer membrane protein assembly factor BamA (Dyella japonica UNC79MFTsu3.2)
MKRIAALILLASLSANVLAFEPFVVSDIRIDGLSRISAGTVLNYLPVNKGDRLTSDAAQR
AIRALYQTKFFSEVEIDREGDIMVIKVTERPSIAKLTLRGNKDIKEDDLRKGLKEIGLSE
GETFDRLSLDRVQQELIRQYYNRGKYNVSVEPHVTNLDRNRVAIDIEIREGKVAKIKEIN
IVGNKAFTDKEIRKDFESDTSNWMSWYSKDDQYSREKLSGDLEKLQSYYMDRGYADFGVD
STQVSIAPDKREMYIAAAVKEGEIYTVSDIHLLGDLVLPEETLRQLVFQKKDQTFNRKAI
EASSDAIKSILASIGYAFAKVTPVPKLDKDKRTVDLTFYIEPGKRVYVRRVVFNGNTRTE
DDVMRREMRQLEGSWYSQPAIDRSKIRLQHLGYFKKVDIDKKLVPGTEDQVDLTVKVEEQ
SAGSLMFGVGYSQYSGIILSASVSQNNFLGTGDSFSVSAQRSDYVTSVSATYFNPYLTDN
GIGIGYNAAYSKSDYGDANSDFVNFTSSQKSFSAFLNIPITDFDNLRAGLGLSSNKINLD
YQYYDSTGQIVSQSLSPQALIDYQNAIGHKTIHSWTGQLGWTHDTRNGYWAPTRGGLMSL
STDIALPGSTVQYYKIFGEANHYWPIGRGFVLYLDGQVGYGKTYGQEYDNSFGDYIKGQK
IDFPFWENYYSGGVRDVRGFQDNTLGPKLCVGLDANNKPLKPDADGRCNGGYYAYAQPVG
GAFKVLGTAQVFLPLPFLKDVNTARVSWFLDVGNAYKDYSSFKASDLRASTGLSLQWQAP
IGPLIINFAMPIRSKKEDRHYEERIQFTFGSQF