Protein Info for ABZR86_RS21470 in Dyella japonica UNC79MFTsu3.2

Annotation: PilC/PilY family type IV pilus protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1058 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 578 to 814 (237 residues), 37.6 bits, see alignment E=6.6e-14

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2BEN5 at UniProt or InterPro

Protein Sequence (1058 amino acids)

>ABZR86_RS21470 PilC/PilY family type IV pilus protein (Dyella japonica UNC79MFTsu3.2)
MSDTRPFVSRRLRRLAFAAALLALPGLALSEDIDLYTGAPVNGGSPNLLILLDNASAWNG
SVSFSCPTAGVVSANNAGKDVGFEQCSLYQAVTAIGSNPVLLGKINMGLMLFDPSSNGGW
FRYPNVGRATDPGALPLMNAAGVASFQNTIKSLDRQADNSNNSAVGGGMQEMWAYFAGKT
GLSGVTYRSPLSGPCQKSFVIYIANAVKNGKPQDAGNSPSAQSSLQQVTGQSNPTQIVIP
PPNNKYQANWGDEWAQYMYQTDLSGGTSTNPQNIITYTIAVTDGSNPDYVQFLQSMSSHG
GGKAFVVNINDPNALNALVNDLLQIFNEVQSINSVFASVSLPVSVNSQGVSLNQVYVGVF
RPDPTAQPRWIGNLKQYQLGLDSNNNVVTEDSLGNSAISNNGSGFISPNALSFWTSDQQT
GTPRNGPLTFPSGSSVVTNWPTSGFWVNKPSGISLAYDAVDGEVVEKGGVGEMLRADYLT
SQTGRTVYTCNGVGSCPTSTAMPNFNTANGSLTAAALGTTSADLSNLINWVRGADNTSPN
NEAEPGPGGAVTIRPSIHGDVLHSRPAIVNYGGSTGVVVFYGSNDGFYRAINGNQTAGIG
TVRPGGELWSFIAPEFFGKLKRLRDNSPIIKLPGITDASAQPKDYFFDGTTTVYQDQRVT
PATTYIYLTARRGGRFIYAFDVTTPTAPRFLWKKSNADIPELGQTWSQPKVARIKGNTNP
VLIMGGGYDSAEDADPVQSADSMGRSIVMLDAVTGAPVWMAAPSCTGQPGTCKTVANMTY
AIPSDITLLDRDGDGYIERLYASDLGGNIWRVDLEPNALTAPTNWTVTQIASLGGTGTSA
RKFFYPPDVVPTTSYDAVAAASGDREHPLASNAASSVINRFYSLRDTNTGNSVAATWSTI
AESNLTDATSTLYTGSGSGFYVTLTNAGEKAVNAPLTVAGYTYFGTNQPANPQNNPNMCY
PNLGIARGYAISFLDGSGLNSNRFVKFDGGGMPPSPIFGLVQLPTSGGGTLLTPVLIGGG
NQLGLVGGNNTSSLGTQKVVPPGTGKRKRTYWYVEGVK