Protein Info for ABZR86_RS20950 in Dyella japonica UNC79MFTsu3.2

Annotation: transporter substrate-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1421 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 516 to 539 (24 residues), see Phobius details amino acids 1069 to 1090 (22 residues), see Phobius details PF00497: SBP_bac_3" amino acids 46 to 259 (214 residues), 107.2 bits, see alignment E=3.7e-34 amino acids 287 to 503 (217 residues), 86.6 bits, see alignment E=7.2e-28 TIGR00229: PAS domain S-box protein" amino acids 558 to 682 (125 residues), 40.1 bits, see alignment E=1.8e-14 PF00989: PAS" amino acids 561 to 668 (108 residues), 32.2 bits, see alignment 3.8e-11 PF08448: PAS_4" amino acids 567 to 676 (110 residues), 50.3 bits, see alignment 1e-16 PF08447: PAS_3" amino acids 716 to 798 (83 residues), 32.3 bits, see alignment 3.9e-11 PF00512: HisKA" amino acids 827 to 891 (65 residues), 66.6 bits, see alignment 6.8e-22 PF02518: HATPase_c" amino acids 938 to 1052 (115 residues), 100 bits, see alignment E=4.3e-32 PF00072: Response_reg" amino acids 1182 to 1295 (114 residues), 74.6 bits, see alignment E=2.8e-24 PF01627: Hpt" amino acids 1330 to 1398 (69 residues), 32 bits, see alignment 4.8e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2BRA5 at UniProt or InterPro

Protein Sequence (1421 amino acids)

>ABZR86_RS20950 transporter substrate-binding domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MFRWLLLGIWLAATSMAQASDATMSPLSPDEKAWLDHHKTITVGIVRENWPPYQTYSHGR
LEGLSADYLRAITGELHIDFEPKVYPSLLALMAALCRGDVDLVMNVNMTPGRTQCLAFSE
PYLDVPPVIVARKDGTRYHNDNGLGNARIAYEKDTATENWIERRLPSATGIPVADTPLGL
RMVEEGRADVYLGDPYVIAHYLGDEAKATLGIYNQGRIASRTIHFAAPRDRLPLLDALNA
ALLRMTPEQHQQIRARWLNATVGVGVRDTGLNLTREERQWLASLPPLKLGFDPNWAPIAY
VDANGHPSGIASDYLDRVASSLGIEFIYVPSRNWGETLQLASHGKVDIVAPLNALPSPDG
NLIYTQPFASFSDVIVVSEKRASPVGVDDLAGLRVVISDPREIPESIRRRMTGASITLVG
DVGTALDKVANGSADAYIGNAAVADLQIRSRFAGQLKIAASADIVSAQSLGVSREYARLV
PYLNQALASIPEKEQQRIRSTWLWSTYTSGLDWRTFWKTAAVVGGSVLAVIALILTAYLR
LRREVRQRVVAERQLADQLSFREALMESLPYPLVAKDTDNRYLAVNHAYEESFGIGRARL
IGQTTEDSSHYSSEWNRRFHQLTADALHTGNHYHAELRLPDATGKERTWLYWIRPFQRAS
GHTGGLLAALVDVTDIREAEERASALDLRLKRITAHLPAVVFELRRAADGTLSFPYVGGN
TQAMWDLSAQDMESNERAAFARVHPEDQAVIERAVEASVATMQPISIVFRSIVHGRERWI
SAEATPQREEHGQTFWSGVWTDVTEARAQAEALAQAKEEAEAAAAAKASFLATMSHEIRT
PMNGLLGLLELLRDGPLTANQQWMLRMVDDSAATLMQILNDILDFSKIEAGQLTLSPTPV
DLRSLVDNVLAIASTLAHEKGLHVRNAIDPRLAAEFMGDGVRLRQILFNLLSNATKFTEE
GAIDVRLDVLASDPARQRIRLTVRDSGIGMTAEQQRRLFEPFVQADASIARRFGGTGLGL
TICRRLVELMDGTLAMHSAPGEGTAMVIELALPVHRMHAPPILPGRRALLALAADEAAVL
AGLLAPLGMMPAGTGDTASLRFVDELDLASATGQTMPTIVVTDEPSPLGYTIEPDGTCML
SRNPFSSAAIEACCRRAFGMAAAGAETEPAVYAPRTEHPGLVLVAEDHPTNRLLIQEQLQ
RLSYRCITVGDGVEALEALSTHDDVALLITDCDMPRMDGYTLAATIRAAETADHRLPILA
LTASAMPGEARRCADAGMDAMLLKPASLASLRDALLNWMPAPVSPLPSEPQAAASALDRL
FGTDARRTALVDGFVESVHDDLGQLERAIDQGDAAESAGHIHRMNGAIKIFGADALAEQG
EALRSELLAEGVTEQGRAQALRYRLGVLQLIESLKPSQAAP