Protein Info for ABZR86_RS20835 in Dyella japonica UNC79MFTsu3.2

Annotation: TetR family transcriptional regulator C-terminal domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 transmembrane" amino acids 155 to 173 (19 residues), see Phobius details PF00440: TetR_N" amino acids 14 to 57 (44 residues), 39 bits, see alignment 5.4e-14 PF13977: TetR_C_6" amino acids 82 to 200 (119 residues), 47.9 bits, see alignment E=1.4e-16

Best Hits

KEGG orthology group: None (inferred from 55% identity to pfl:PFL_2350)

Predicted SEED Role

"transcriptional regulator, TetR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2BTP2 at UniProt or InterPro

Protein Sequence (222 amino acids)

>ABZR86_RS20835 TetR family transcriptional regulator C-terminal domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MPRKPNTELRRQQIVDGLLRTIAAQGYTGATIQAIASASGLAPGLVHYHFRDKREILVTL
VEQLGAYAASRFQARAAVAANARERLRAYIDARLAYGSDANPDAVAAWVMIGAEAVREPD
VREIYQRAVRQEIALIRRLLRAYLLECGKRVHKLDAFAAGLLAFVEGVFVLASNARTLVP
TGFAADMAAAWVERYVAAELPVAGHAVAGKKTVRQKSKGGQR