Protein Info for ABZR86_RS20780 in Dyella japonica UNC79MFTsu3.2

Annotation: TolC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 12 to 474 (463 residues), 308.3 bits, see alignment E=4.6e-96 PF02321: OEP" amino acids 67 to 261 (195 residues), 64.1 bits, see alignment E=7.7e-22 amino acids 292 to 463 (172 residues), 88.5 bits, see alignment E=2.6e-29

Best Hits

KEGG orthology group: None (inferred from 84% identity to bph:Bphy_3549)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2BV40 at UniProt or InterPro

Protein Sequence (487 amino acids)

>ABZR86_RS20780 TolC family protein (Dyella japonica UNC79MFTsu3.2)
MSPKHVLAVLMAGGLLAGCAVGPDYVRPRVAMPDHFQGQAEVGQRHAPAGAELATWWTGF
GDPQLTRYVTLALEQNLDLAQASARVAQARAGLGAATAALLPSGNISGQAARAYQSVETP
LGQVLNATPGFDRYGNSYEADFSASWELDVFGGLRRGREAALADYQASEAGALATRLAVA
AQTADIYITIRGLQARLKVARQQVQTQQDLLATIKLLYGKGLAPELQVKQADGALAQVQA
SVPVLETGLDAAMNALDVMLGAQPGTHRAELMEDREIPSAPQIAATETPGELLRRRPDLI
VAERRLAASNARIGVAIAEYYPKLSLSGLIGSATSVAGGNLFTSGANQAAGVLGLRWRLF
DFGRINAQIQQAKGQQAEMLAAYRLAALHATEDVENAFSALVKREEQTAVLDRGVDSLGR
ARAASFAAYQKGVVSLIEVLQADENLLRASDERAQAQTESARAAVAAFKALGGGWQARES
GAAVVAR