Protein Info for ABZR86_RS20530 in Dyella japonica UNC79MFTsu3.2

Annotation: YccS family putative transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 717 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 44 to 61 (18 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 95 to 113 (19 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 152 to 172 (21 residues), see Phobius details amino acids 402 to 420 (19 residues), see Phobius details amino acids 425 to 443 (19 residues), see Phobius details amino acids 449 to 467 (19 residues), see Phobius details amino acids 473 to 490 (18 residues), see Phobius details amino acids 496 to 514 (19 residues), see Phobius details amino acids 520 to 542 (23 residues), see Phobius details amino acids 618 to 633 (16 residues), see Phobius details TIGR01667: integral membrane protein, YccS/YhfK family" amino acids 16 to 674 (659 residues), 660.7 bits, see alignment E=2.4e-202 TIGR01666: TIGR01666 family membrane protein" amino acids 23 to 668 (646 residues), 612.1 bits, see alignment E=1.2e-187 PF12805: FUSC-like" amino acids 73 to 358 (286 residues), 273.1 bits, see alignment E=4.6e-85 PF04632: FUSC" amino acids 402 to 711 (310 residues), 39 bits, see alignment E=8.6e-14 PF11744: ALMT" amino acids 407 to 598 (192 residues), 26.6 bits, see alignment E=6e-10 PF13515: FUSC_2" amino acids 417 to 536 (120 residues), 82 bits, see alignment E=8.5e-27

Best Hits

Predicted SEED Role

"FIG00956403: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2C162 at UniProt or InterPro

Protein Sequence (717 amino acids)

>ABZR86_RS20530 YccS family putative transporter (Dyella japonica UNC79MFTsu3.2)
MSLPPASLIDTWRRLRGSDRFAECLRVLLGLGGVVLYCLAEGRFADAIPALLGVIACALA
ETEDHWRSRLVTLLVTLACYAVAAGAVQLLLPHPVLFALGLPLATFALVMLGAASHRYAA
IAGSTLLLSVYTMIAADAAARSGAHPGVFGESALLLGGAAWYGLLSLLWSALSPQQAVRH
ALARTFDALAGYLESKAALFAPLPGVDREALQQDLAMRNEKVVQALNETRLVLIDRIGPR
RPSGPTAERLRLYFAAQDIHERVSSSHYPYDALAEAFFHSDVLFRCEHLLRRHAGLCRHR
ARTLRLRTSLQVDGTARAALNDVHDAIDALRMQSAPPTTQLLQSLDALLRNMEAIQALLE
HEQPASGPVPGEESALQDPGPGNLAEAWERIRIQFTPRSFRFRHALRLALALLAGYAVLR
VVHPLNGYWILLTTLLVCQPSYGATRRRLLQRTAGTLAGLVAGWAALRLLPFGPAQVPLL
IVAGVVFFAARQRRYTLATAAITLFVVLCFNQVGNGYEVMWPRMVDTLIGVAITALAIHL
VLPDWQGRRLDQVMADTLRCDARYLARILAQYAEGRRDDLPYRIARRDAHNADASLSGVL
SNMLREPGRHRRGGEALLRFLGAAHVLLSQLSALGANRQALAAGHAREAVQACGARTVEA
LEQLAEALETNEPAPLLLALPAYVGGDETARLVLGQLALIQAQRERLAELALEVRDS