Protein Info for ABZR86_RS20405 in Dyella japonica UNC79MFTsu3.2

Annotation: PepSY-associated TM helix domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 transmembrane" amino acids 23 to 46 (24 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details amino acids 337 to 359 (23 residues), see Phobius details PF03929: PepSY_TM" amino acids 21 to 362 (342 residues), 171.9 bits, see alignment E=1.4e-54

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2C395 at UniProt or InterPro

Protein Sequence (376 amino acids)

>ABZR86_RS20405 PepSY-associated TM helix domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MTVPSQPSVRHPWRPRDLLRKLHLWLGLSVGLAFAVLALSGTVLAFQTDLLRWRHPELFG
HALPTPAQRAAILERIHDAHWPAPLRSIDTPTAELPVWQLSLAGEKRVYLDPADGHELLT
RSKDHDLVLWLRDLHTHLLSGKNGETALGILGLAELSLILIGLTLWWPRRGHWRHAVRMY
AQPPTRRWRSWHQSVGAMLFPLLLLSTLTGITLIYKDTTRSVLAAAFGDRQGPPSKARAL
PPRDMPLQWAASLAAAQAVLPDAELRRITLPSEKNAALTVRARGPREWNAVGRSVVVIDP
YSATVLSVYDAQAQGGGARLIDKLYPVHAGQVGGVPWQLLIGVVGVLPAFFLATGFLFWR
TRRRHLKHAQHMLGKA