Protein Info for ABZR86_RS20300 in Dyella japonica UNC79MFTsu3.2

Annotation: pentapeptide repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 698 PF00805: Pentapeptide" amino acids 128 to 164 (37 residues), 33.9 bits, see alignment 2.8e-12 amino acids 173 to 201 (29 residues), 15.5 bits, see alignment (E = 1.5e-06) amino acids 206 to 237 (32 residues), 19.6 bits, see alignment (E = 8.4e-08) amino acids 337 to 368 (32 residues), 20.4 bits, see alignment (E = 4.6e-08) amino acids 388 to 412 (25 residues), 19.7 bits, see alignment (E = 7.6e-08) amino acids 504 to 543 (40 residues), 43.1 bits, see alignment 3.8e-15 amino acids 534 to 572 (39 residues), 30.5 bits, see alignment 3.3e-11 amino acids 607 to 635 (29 residues), 16.8 bits, see alignment (E = 6e-07) PF13599: Pentapeptide_4" amino acids 128 to 199 (72 residues), 33.6 bits, see alignment E=5.6e-12 amino acids 206 to 283 (78 residues), 27.3 bits, see alignment E=5.4e-10 amino acids 465 to 541 (77 residues), 53.7 bits, see alignment E=3.1e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2I5T2 at UniProt or InterPro

Protein Sequence (698 amino acids)

>ABZR86_RS20300 pentapeptide repeat-containing protein (Dyella japonica UNC79MFTsu3.2)
MFVFEGKCRLITPGQTVRFMFHVDHKAGQLRIQIDEREPDTHSFAAWAELFKGLFPFPAP
RGLLSMLAEAPQEPEPGNIALLANLAGIGSGLQGKLDLRTDAWGVSSILQSKSCEKADFS
PQGKTVIDLRDTDFSGVRFVDTDFSQAILSGVNFSRCSFENCTFARTQLSLLRLIGADLT
RQPLRNLDLSGAKLDEARLDGNYVMGCKLQGVSLRKASLNRTQFMSSNMTYTTLDGATGT
LPLFGDCDLAFASLKQVKFAKPVFSGSQLVSIEAADASLADARFGRVTLEDLTERLVLKA
GAGSNPIDNPAAIHLADFSGATLTGARFDGAGITQSKFDGARMQKAILGGARMRWVSFKD
AELEGADFGAREAEYMQGHRMRDPVPVASFEDVDFDNANLHATNFRDAILTGKVRHTRLP
RRDTSKAQRMCLAGARFRSGLLGLDWSHVDASGATIALDLPAGVEIKNFKARQAILPQVD
FAGLRLPNADFEAADLRNMRFGNCELRDARFNKAILEAADFTGANLEGADFSHASLMNAN
FSGAWMWSSKFNGAVLTEANFSSAMLAEVDFKSIGDNRLSYVNFSGACLVSATFTNIKAP
RSGNKQTNFSSACLAGADFVGASLMDVVLTRAQISSRSGTITALHRLRPEGKEFDYTATK
LDPQNTGLHTTCPDGKGGPCSLEQLRAVPIPAQWSKSD