Protein Info for ABZR86_RS20170 in Dyella japonica UNC79MFTsu3.2

Annotation: flagellar basal-body MS-ring/collar protein FliF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 transmembrane" amino acids 31 to 51 (21 residues), see Phobius details amino acids 464 to 486 (23 residues), see Phobius details TIGR00206: flagellar M-ring protein FliF" amino acids 27 to 563 (537 residues), 318 bits, see alignment E=7.4e-99 PF01514: YscJ_FliF" amino acids 52 to 228 (177 residues), 197.2 bits, see alignment E=2.1e-62 PF08345: YscJ_FliF_C" amino acids 261 to 441 (181 residues), 152.6 bits, see alignment E=1.1e-48

Best Hits

KEGG orthology group: K02409, flagellar M-ring protein FliF (inferred from 44% identity to xal:XALc_1396)

Predicted SEED Role

"Flagellar M-ring protein FliF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2I499 at UniProt or InterPro

Protein Sequence (565 amino acids)

>ABZR86_RS20170 flagellar basal-body MS-ring/collar protein FliF (Dyella japonica UNC79MFTsu3.2)
MAENAIAQTDPNGKRLDPLKQLAQSPATRQLLLLVAVAAAVAFGVAVVLWSRGPNYALLY
AGLDSKDASAITQALQASNTPYQLGPDGASISVPAADLPAVRLRLAAQGLPQGSAGTSAT
VPGADSPFGMSDLAERTRYQQMLETDLGNTIAGLQSVRAARVHLALPKPSAFIRDNKQAS
ASVLVTLFPGRQLDASQVAAIVHLVASSVPELDPRQVSVVDQQGQLLTVSDPDNPSAVGD
SRLRLATRMENTYAQRIEELLTPLVGPGKVRAQVYADLDFSQTEKATETFNHDNPALRSE
QVSSEQRRDGSSNGAVPGALSNQPPTTVAQPTAAKPNAGAANASANATTANANSGGESSS
SATRNYELDRTVSHVSDPAGRLARLTVAVAVDNKATTDDKGNNKSVPFTAQELEHLTDLA
KNAVGFNQQRGDSVTVINQPFHKAPGNEPLPETPFWQRPGVMDLIKQGGGVLVALIIAFG
LLRPLLRGVFKGTPGTALQALPAGAGIPTVSVRIDDADDDMAPGRLGPPPGMNYEARVAM
AKRMVTENPKQVAQVVRSWVSEDGG