Protein Info for ABZR86_RS20130 in Dyella japonica UNC79MFTsu3.2

Annotation: flagellin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 PF00669: Flagellin_N" amino acids 5 to 141 (137 residues), 155.6 bits, see alignment E=8.6e-50 PF00700: Flagellin_C" amino acids 293 to 377 (85 residues), 92.5 bits, see alignment E=1.7e-30

Best Hits

Predicted SEED Role

"Flagellin protein FlaB" in subsystem Flagellum or Flagellum in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2I016 at UniProt or InterPro

Protein Sequence (378 amino acids)

>ABZR86_RS20130 flagellin (Dyella japonica UNC79MFTsu3.2)
MVMSVTTNISSLNAQNNLAKTQSKLSTAIERLSSGMRINSAKDDAAGLAISTRFTTQING
LNQAVRNANDGISMAQTTESALDEVTNNLQRIRELAVQSATGSNSTTDRAALDKEVQQRL
AEVTRIAQQTNFNGTKVLDGSAGTVAFQVGANVGETISVNFSVGMKTNQVGQVDTAAVTA
SGTAPTYPLTLAADQTVKIGTTNVTLKSGSVYNTAQDVSDALNAGFKDAGVDAQASTDAT
GKISVAAFGADVDASGATALGFAAADKATHALDSKHLSDASISTVSGANDAIRRVDAALQ
SVSNLRSDLGAVQNRFQSTISNLQTISQNLDSSRSQIQDADFAAETANMSSANILQQAGV
SVLAQANSSQQSVLKLLQ