Protein Info for ABZR86_RS20020 in Dyella japonica UNC79MFTsu3.2

Annotation: TMEM43 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 261 to 280 (20 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details amino acids 317 to 336 (20 residues), see Phobius details PF07787: TMEM43" amino acids 104 to 280 (177 residues), 84.7 bits, see alignment E=3.5e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2HZ53 at UniProt or InterPro

Protein Sequence (342 amino acids)

>ABZR86_RS20020 TMEM43 family protein (Dyella japonica UNC79MFTsu3.2)
MSARQWLAGLAGAVLVLAGLGLVAMTEQAAVEHNVAAERHGGQVLDVQGDTRPDIGKHRY
MVRVSGKLNVVDAPLDPEFNQRMSTPVLIRHVEMFQWREVRVGSDVHYEQDWVDRPIDAS
RFEKPAGHANPGAFPIQGKQFDAGLVRIGGYALAPALLHALPGGDLVGPDLKTLPANLAA
SFASHGDYLLTSANPEHPRLGDLRVSWEAVPVQVLTVFARPQGDLLVPASDAADGKGYDV
QVGDRRLVDVLPDVPEPPVFAVARRVLAVLLVSLGVFLLLRSRMSDHHAPLIALGAGLLL
AGAVAGVMWLGKDLQASAYWFVLAVAGLAVVVWRLHARAAHH