Protein Info for ABZR86_RS19825 in Dyella japonica UNC79MFTsu3.2

Annotation: lipopolysaccharide transport periplasmic protein LptA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR03002: lipopolysaccharide transport periplasmic protein LptA" amino acids 21 to 161 (141 residues), 101.6 bits, see alignment E=1.7e-33 PF03968: LptD_N" amino acids 38 to 142 (105 residues), 79.8 bits, see alignment E=9.3e-27

Best Hits

KEGG orthology group: K09774, lipopolysaccharide export system protein LptA (inferred from 33% identity to pcr:Pcryo_1489)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2I107 at UniProt or InterPro

Protein Sequence (189 amino acids)

>ABZR86_RS19825 lipopolysaccharide transport periplasmic protein LptA (Dyella japonica UNC79MFTsu3.2)
MGSRLLLALAALALLPAVAFAKKDDRSKPMDFTAKSTNAYNAPNSITTLSGNVKLTQGTL
LITGAEAKVYLDKDTQISRVVVTGSPAHIQQLDENNNLMQGDAAQLDYDNINGIAVLTGN
AKVTQQGRGEFHGDKITYNTDTSLITGESGGDGLVHGTFLPKPKPAAPAEAAKPAEGQKP
AEGQKVEGK