Protein Info for ABZR86_RS19720 in Dyella japonica UNC79MFTsu3.2

Annotation: ATP-dependent RNA helicase HrpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1343 TIGR01967: RNA helicase HrpA" amino acids 21 to 617 (597 residues), 891.7 bits, see alignment E=4.1e-272 PF00270: DEAD" amino acids 88 to 236 (149 residues), 29.8 bits, see alignment E=1.7e-10 PF00271: Helicase_C" amino acids 286 to 412 (127 residues), 47.1 bits, see alignment E=9.1e-16 PF04408: HA2_N" amino acids 476 to 501 (26 residues), 21.7 bits, see alignment (E = 6.2e-08) PF21010: HA2_C" amino acids 502 to 558 (57 residues), 27.7 bits, see alignment (E = 1.1e-09) PF07717: OB_NTP_bind" amino acids 674 to 750 (77 residues), 40.3 bits, see alignment 1e-13 PF11898: DUF3418" amino acids 764 to 1340 (577 residues), 614.9 bits, see alignment E=5.9e-188

Best Hits

Predicted SEED Role

"ATP dependent RNA helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JVC6 at UniProt or InterPro

Protein Sequence (1343 amino acids)

>ABZR86_RS19720 ATP-dependent RNA helicase HrpA (Dyella japonica UNC79MFTsu3.2)
MSDTPASRPVPSDARLRTLRQALDGVSSRDFGRLLGRWRGLSRRADENKLEALAADVERS
AAKRRARAAAKPTIRLDEALPISARADEIVELIRRHQVVVIAGETGSGKTTQLPKLCLAA
GRGEAGMIGCTQPRRLAARSVARRVAEELGTQLGDQVGFQVRFNDQVSERSLVKFMTDGI
LLAETQGDPWLSAYDTIIIDEAHERSLNIDFLLGYLKRLAVKRPDLKIIVTSATIDTARF
AEHFGNAPVVSVEGRAYPVDVRWRSLDALGERRGRDMQQGGAEHIAAVLDELTREDPRGD
VLVFLPGEREIRDAHLLLSRRQYRETEILPLYARLSAADQDRVFKPGTKRRVVLTTNVAE
TSLTVPRIRYVIDSGLARVKRYSQRSQLERLHVEPIARAAADQRKGRCGRVGPGICYRLY
DEADYSARAAFTDPELLRSSLANVILRMLSLQLGEVDEFPFLEAPDPRVVADGYRRLAEI
SAIDEHKRLTAVGRTLAKLPIDVQLARMLVEANQLGSLRELLVLVAFLSIQDPRERPADA
RQQADQAHAQFADAKSDFAGVLNLWRAYDESHKELTQSKLRDWCSRHFLSFMRMREWREL
HRQLLLVAEELGWSLAASAPVGTDGVRGGKGAPVLHAKKQASNKRSGEPRPLTPALSPEG
RGSDDDDQRLYEAVHRSLLAGLPTQVGHKDEKGLYRGTRERRFQVFPGSALAKVPPNWIF
AAQILDVGGKVWGMMCARVEPAWIEQQAAHLLKASCRDAHWSRKRGTVVAYEQVSLFGLT
LVERRPVTFQQQDPPLAHEIFLREALARGDIDARADFVRANLRVMEDAWGIEAKQRREGL
IRHEDELAAFFEGKLPQDIASSRGLDAWYSRARPAEQAALRWSLDDVMAGGAGLDPKAFP
ASLDIQPQRYRLEYRFVPGDDADGVTLHLPLAMLNALPAARCEWLVPGLLGEKVAELIRG
LPKPLRRNFVPAPDFARAFVEAEAPRDEPLSKALAAFLKRATGVDIAAGEFDPTALPAHF
RMRFRLHDENGRTLAAGRDLAALRGQWEGQAREAFSRKTDLELTREDVTRWDFEDIPAQV
RSDGGLMAFPALVDLGEAVALRVFERSDEAREAHRGGVVRLLRNALASEMKQARRRLPVG
NPLALKYAPLGSVDSLREDLAEGGFADLLERHALDARTAGAFEALHTQANRELFGAAVER
LKLAEPIIEAQAELKPWLEPPLIGFARASYDDLREQLAHLLEPGFLRELPTARLAHFPRY
LKAMRLRAERLRQDPAKDQQRMLQVLPYWREYLKHRAAGAEPAALAELRWLIEEWRVSLF
AQELKTAEPVSAKRLARALEALG