Protein Info for ABZR86_RS19700 in Dyella japonica UNC79MFTsu3.2

Annotation: translocation/assembly module TamB domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1249 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF04357: TamB" amino acids 909 to 1248 (340 residues), 202.4 bits, see alignment E=6.8e-64

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JVD8 at UniProt or InterPro

Protein Sequence (1249 amino acids)

>ABZR86_RS19700 translocation/assembly module TamB domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MATWFKRIALAFGILLLILAAALWWLLGSASGLRFALARAQSFTDGALTVQQADGRLAGP
LLLKGVRYADGQGMEVKVATATLDLRLWPLLRKRAHVLNLDVDGIDVALPKPKEEEQPSE
SSFSLQPPLDILLDRVHVGAVRIAQAGEPLFASNRLDLAGQWTAAGIELRKLNLLAPDGH
ADLNGALVIAAGEKGDGAASFAWKVAGVDYAGSIEAHGDGRRIKTELKLIQPTALQLTVD
AAQRGNYDWNARLDAPRFDPKPLLGDSSLSALGLALQGSGDRHGGSLQGKVELNDYQLLL
QPLRARFSDDFKTLKLEQLVLGSPQIKGQFEASGTVQLGAQPVSGDLAIAWKDLLLPASL
AGQDLASQGSLKARGSADAFHAEGDVDVGPPGKLAKLALNLDGTPKIITLHTLELKQPQG
GMQAKGTLTLQPALAWQLDATASRLDPGQLLAGWNGALDFDIATMGTLPENQPDATLEIR
KLTGVLRERPLRAQGKLHLTPQQVVDGKLDLASGGSTVKLDAKPGASNDAQLDLAIASLG
DWLPDAQGHVQGDLRLRGKSPKFSLDAKLQGNGIVYAGQTVDSLHLAANLPDLSNPGGQL
DLDTGHANFGGLDFKRIELRGDGTASRHSLTLQASGQQLSTRVALSGSMKGSAWNGTLST
LDLEPQGIPRWHLQQPSQLSYDGGAMSLSELCLTAGEPQLCVAAKQDKAGNLDASYRLRD
LPLALLMTFAGPDLPMRADGTLGGSGSIRRNAAGALSGSASITSPRGTITYVDRADQPLL
SYNELAVQAQLSPSSQSATLHAGLNDGGRVDGQLALNGAQQALGGQLELHLNNLKFIELF
TNEVADVKGAANGSFRFGGTLAQPLVAGQATVTGFAAEVPSAGLKLAQGQLTVSTTDARQ
FLIGGSVQSGKGSLRVDGHAGLGEGATTAINLKGSQFTAADIPSAKVIVSPDLQITQDAK
GINVGGDVTLDTADIDVSRLPGAGATQASPDVVVVDEEQQAEKAKSLPITASVKVNLGRK
THLVGFGLDGRLGGTLTVSERPGRATTGQGQITVDGIYKAYGQNLQIEQGRLLFAGTPID
NPGLDIRAARKLNPNATIDEGQKVGLMVSGTAQRPVLTVFSNPVMEQSDALSYLITGKPL
SQVKGGEGDMVGAAAQALGSAAGDLLAKSVGSKLGIDDVGVSSNEALGGTSAFTVGKFLS
PRLYLSYGVGLFEPGQVITLRYRLSHRWNFEAQSATDFNRASLNYRIEK