Protein Info for ABZR86_RS19620 in Dyella japonica UNC79MFTsu3.2
Annotation: LysR substrate-binding domain-containing protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K03566, LysR family transcriptional regulator, glycine cleavage system transcriptional activator (inferred from 41% identity to azo:azo0132)Predicted SEED Role
"Glycine cleavage system transcriptional activator GcvA" in subsystem Glycine cleavage system or Orphan regulatory proteins
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1I2JE15 at UniProt or InterPro
Protein Sequence (284 amino acids)
>ABZR86_RS19620 LysR substrate-binding domain-containing protein (Dyella japonica UNC79MFTsu3.2) MRYTLPPMHTLRAFEAAARLRNFTLAGEELHLTASAVSHQIRALEAFYGTALFRRQRHEV ALTSAGERLLDAAQPLLERLSALGDALRARDAQRLSLTAPPSLVSRWLMPRLGAFLAAHP QVDFRLHATTALLDLDAEQADLAIRYGDGRWPGLHAEKLFDESIFPVAAPAYARMLKLVG DDFHAATLLRDDFHSWERWPGAAGATPSGPVYSDSALLLQAAEAGHGVALGRSVLVADAI RSGALVRLGTRAIAVPGAYYLVSARDVADTPAVAAFRAWLATAT