Protein Info for ABZR86_RS19590 in Dyella japonica UNC79MFTsu3.2

Annotation: GGDEF domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 36 to 55 (20 residues), see Phobius details amino acids 61 to 84 (24 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 120 to 139 (20 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 218 to 380 (163 residues), 138.3 bits, see alignment E=1e-44 PF00990: GGDEF" amino acids 222 to 377 (156 residues), 128.8 bits, see alignment E=8.7e-42

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JK28 at UniProt or InterPro

Protein Sequence (391 amino acids)

>ABZR86_RS19590 GGDEF domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MHLDLFTLGVIGLAVGATISLSFTLLGLVLRGLPALRIWAAAFWIITLAGLAQGLDERET
FLSAIVGNVLIAIANAAMLMGIAVHVRYALRWRWPLLLSGVFLVMQVAFLLAPPGQRVEA
LAFGGRSVVWDAWMIWVLLRRAPRDLRVSCVFTALVFGSDAVFYAMRSIVMVAPATTSQV
LLATQLVTANYLFAIFCTFLVSTGFTLMLAERLTLDLRSMARTDGLTGLRNRNAVIDDGR
QAVAACRAQGRTSSVLLLDLDRFKAVNDSWGHAAGDEVLRHFVKIVHAVQLPDGALLGRY
GGEEFLLVLPGIDAAQAIVAAEEVRSRLAAAPAAHGELRIAVTTSIGVAGGAGLDINSLI
TAADAALYRAKHHGRNRVEWAGFREAQTAAV