Protein Info for ABZR86_RS19455 in Dyella japonica UNC79MFTsu3.2

Annotation: RDD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 transmembrane" amino acids 37 to 61 (25 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 124 to 148 (25 residues), see Phobius details PF06271: RDD" amino acids 31 to 161 (131 residues), 70.2 bits, see alignment E=1.1e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JH76 at UniProt or InterPro

Protein Sequence (167 amino acids)

>ABZR86_RS19455 RDD family protein (Dyella japonica UNC79MFTsu3.2)
MEQERNYYAAPQAAVDDVGGFSAEDLEARKAGRGQRLAAVILDSVIFAVGGVFAGIGGAA
AGRGDGGMVAMAVGSLIILALIVVNCVLLHQNGQTLGKKLLGIKIVRSDGGRIGLGRIIG
MRVIPMGLLGAIPYLGFLISLVDSLMIFGVERRCVHDMIADTIVIQA