Protein Info for ABZR86_RS19430 in Dyella japonica UNC79MFTsu3.2

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1039 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 337 to 356 (20 residues), see Phobius details amino acids 363 to 384 (22 residues), see Phobius details amino acids 390 to 409 (20 residues), see Phobius details amino acids 441 to 460 (20 residues), see Phobius details amino acids 470 to 496 (27 residues), see Phobius details amino acids 528 to 549 (22 residues), see Phobius details amino acids 860 to 879 (20 residues), see Phobius details amino acids 886 to 905 (20 residues), see Phobius details amino acids 910 to 931 (22 residues), see Phobius details amino acids 960 to 979 (20 residues), see Phobius details amino acids 992 to 1014 (23 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1014 (1008 residues), 739 bits, see alignment E=8.3e-226

Best Hits

KEGG orthology group: None (inferred from 51% identity to pbr:PB2503_00350)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2IG15 at UniProt or InterPro

Protein Sequence (1039 amino acids)

>ABZR86_RS19430 efflux RND transporter permease subunit (Dyella japonica UNC79MFTsu3.2)
MLTFIVRGALRHPWWIALLAALLLAVGVAHLRSARYDVFPDFVPAELTIQVEAPGFTALQ
VEQRVTQPIENAVNGGTDVDTVRSQSIQGLAVITVVFKQGSDPFRDRQLLAERVTEAAAQ
LPQGVQAPSLSPMVSSTMDLLKFGLLSDKLDPLALRSLADWTIKPRLLAVPGVADATVFG
GGVREWQVRVHPDRLAAFGLTLEDVRAAAAAASGVRGAGYVDTPAQRVVLEADGTLTAPA
QLGQAVITQHAGRNVTLADVADVAEHAAPAFGDSRIMARPGVLVALNSQYGANTLEVTHA
VEAALDELKPMLAEQGVSLVSSLHRPATFVEVALADMRGALLFGAVLVLAVLVLFLRDWR
TALISFLSIPLSLAVAVMAFPWFGWTINTMTLGGLAVALGVVVDDAIIDVENVMRRLRRA
GAAAARAEVILDASLEVRRPVVLATVVVGLVFLPILLLPGLQGSFFAPLAGAFLLATFAS
LLVALSVTPALCLLLLRADRRHREPRWLKRAKLAQHRLLERAMPHGRAWLIGALLLGAAA
IAVLPLFGASLLPEFREGHFVIQLQGPSGTSLEEMTRIGERMGRDVLAVPGVATVSQQVG
RAAMVQDTWPPNQSEFHVELKPGLGAADQIRIERALKLVVDGYPGFGGEVVTFLGDRIGE
SLSGETAPVTISLYGSDLDTLDRLAGKVKQAMPAVPGNGSVRLSDAPTVPTLRIVPLPER
LAAHGLRMTDVLDAVAAAHQGVVAGEVFDGVQPIAIRLQLDPSAQRDPETVGELLLRNPA
GRSVPLSAVAETDLLEGRANVLHEGGRRRLVLAVYPATTDVVGFVDRARALLARRVALPP
GYYLEFGGTAEGATRARRDLLLHGGLAGVGIVALLLAAFPERRSVALILANVPFALVGGV
IAAALTGAVLSIGALVGFVTLFGISARNSIMLVSHYEHLVREEGAHWNRYTVLRGARERL
TPILMTALVTALGLLPLALGNGEPGREVEGPMAIVILGGLASSTVLNLLVLPALAGRYLR
LRPPAPQCTGLARRSRSAP