Protein Info for ABZR86_RS18600 in Dyella japonica UNC79MFTsu3.2

Annotation: YjbH domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 722 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF06082: YjbH" amino acids 37 to 706 (670 residues), 794 bits, see alignment E=8e-243

Best Hits

Predicted SEED Role

"YjbH outer membrane lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2G8P6 at UniProt or InterPro

Protein Sequence (722 amino acids)

>ABZR86_RS18600 YjbH domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MIARLGWRSGRMMWPATLLLSQCIVGVLHAQSAPGYTRNDYGEVGLMQTPTARMADEGEL
AFTASRTYPYTDYNLSLQPLPWIEGTFRYSSVSNRLYGPTGLSGHQSYKDKSIDLKLRLW
DETRWRPAVAVGGRDIGGTGLFGSEYVVASKRFGPVDVTAGLAWGNMGSRGDIKSPLGWA
WSGFDNRAGNTNQQGGEFNTLRYFRGPAAFIGGIEYQTPLDKLRIKVELDGNNYKHEGLG
NVFRQRSPINVAALYRFNDNVDFSLGYERGDKIMATLTLHTNLARHAEPRKTDDPPPEPV
RGLAATPDPPQGAAALPRKAPDQVDWDELSKALGANAGIDVSSIGRRGSELVVHGEPRAY
FYPSRALGRASRILDNRVDQSIDWFTVAEENYGLPLDEQSIHRPRFIDALDHRIDMQELR
RSAEQNAPGQQEEQTLYTKPPKRFDGGVSLGYQQSLGGPNAFVLYQFSLNGAATYRFNRN
LWWDGVVSVNLLNNYDKFTYTAPSLLPRVRTDIRQYLTTSDVTMPNFQLTGTKVLAPDVF
GMAYGGMLESMYAGVGGEVLYRPYGERWAFGVDMNWVRQRGFRQDFALRGYKTVTGNATL
YYKTGFHDVTIAASVGRYLAKDYGVTLDISREFDNGVRMGAYATITNKSGTQTGEGSFDK
GVYFSIPFDLLLPHSSRARANFMWEPLLRDGGARLYRRYTLYDMTSDRDSELFEKNLEKA
LD