Protein Info for ABZR86_RS18365 in Dyella japonica UNC79MFTsu3.2

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details PF02518: HATPase_c" amino acids 361 to 470 (110 residues), 62.8 bits, see alignment E=6.1e-21 PF14501: HATPase_c_5" amino acids 361 to 454 (94 residues), 22.8 bits, see alignment E=1.1e-08

Best Hits

Predicted SEED Role

"Sensor protein PhoQ (EC 2.7.13.3)" in subsystem Lipid A modifications (EC 2.7.13.3)

Isozymes

Compare fitness of predicted isozymes for: 2.7.13.3

Use Curated BLAST to search for 2.7.13.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JJE5 at UniProt or InterPro

Protein Sequence (471 amino acids)

>ABZR86_RS18365 ATP-binding protein (Dyella japonica UNC79MFTsu3.2)
MPSPAAKTKANEPGQRRALSLAARAALATGFALAAFLGVVGLTLSRSTAETSLKELQDRL
QNYVVAYLAGTEVGRSGKVLLPDTPPDPRFSQPGSGLYALALGENGAKLESPSAIGRDFA
FLKRLEPGQAQFIGPIDTRMGRIYYYAYGVALDTSEKKSVKLTFMVAQAEDQLEGQNAVF
RRSLIFWLATLGVMLILLQLLLLRWSLTPLRRVASDMSRVERGEAEHLDSSYPLELIGLT
ERINAFIDSEREQRTRYRNTLADLAHSLKTPLAVIRSRLEATEGNPSPVRSDVVEQVRRM
DELVAYQLARAATTGRQTFASAIPIAGHAEDLVQSLEKVYAAKNVLCEFDIEEGAAFYGE
QGDLLELMGNLLENAFKWAGHRVLLVVKVEPVAGRQRPGLLMSVEDDGPGIDDDKIEKVL
QRGVRGDERVQGHGIGLSIVQDIIKAYRGELSVDRSPEFGGARFSVRLPPS