Protein Info for ABZR86_RS17715 in Dyella japonica UNC79MFTsu3.2

Annotation: efflux transporter outer membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 16 to 459 (444 residues), 402.5 bits, see alignment E=1.3e-124 PF02321: OEP" amino acids 66 to 242 (177 residues), 57.3 bits, see alignment E=9.2e-20 amino acids 277 to 457 (181 residues), 108.4 bits, see alignment E=2e-35

Best Hits

KEGG orthology group: None (inferred from 57% identity to rsl:RPSI07_mp0540)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein CmeC" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2J3L0 at UniProt or InterPro

Protein Sequence (485 amino acids)

>ABZR86_RS17715 efflux transporter outer membrane subunit (Dyella japonica UNC79MFTsu3.2)
MQKSALIRTPWAAGLGLALAGCAVGPDYREPAPAAPVAWSAPLPHGGAVGSLDAWWAQFD
DPLVARLVAMAEADSPSLAKAWANIEKARATLVSARADGLPTLTGGSSITRSKQQILPGS
ETTSSTRSGELDASWEIDLFGKVRRTTEAARALVGARVSDWHDARVSLAAEVADTYVEYR
GCAQLADAYERELQSETQTEQATASLVRAGFKSPSDGALARAGTADTRSTLVSQRGQCEL
LVKSLVNLTGSDEAQLRALLVMGDGHLPQPAMLAVESVPAQVLRQRPDLASLERQVAAAS
ADIGVAQADLYPSLSLSGSISVSASNSTRPATGWSLGPSLSIPIFNGGSRRAAVKSAYAS
YAVALADYRQGVRDAVKEVEQALVNLDSTDRRAADAATADDEYRRYFLATEKSWRAGRET
LLTLEEARRSALSAEVQRITLQRDRVAYWIALYKALGGGWAPDRPAQPPTAALPASPINH
PRSAS