Protein Info for ABZR86_RS17625 in Dyella japonica UNC79MFTsu3.2

Annotation: RHS repeat-associated core domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1090 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF05593: RHS_repeat" amino acids 366 to 401 (36 residues), 33.2 bits, see alignment (E = 2.6e-12) amino acids 388 to 424 (37 residues), 36.1 bits, see alignment (E = 3.3e-13) amino acids 430 to 463 (34 residues), 28.7 bits, see alignment (E = 6.8e-11) amino acids 472 to 503 (32 residues), 27 bits, see alignment (E = 2.4e-10) TIGR01643: YD repeat (two copies)" amino acids 388 to 429 (42 residues), 35.1 bits, see alignment (E = 1.3e-12) amino acids 430 to 471 (42 residues), 30.9 bits, see alignment (E = 2.6e-11) TIGR03696: RHS repeat-associated core domain" amino acids 882 to 957 (76 residues), 66.3 bits, see alignment 2.7e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2J3W9 at UniProt or InterPro

Protein Sequence (1090 amino acids)

>ABZR86_RS17625 RHS repeat-associated core domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MSGKGMLRLLGVLLCLCLSALLAPTASARPMCTISLNSAQNGQTLVTPPGVSISLSGTIT
CDTPLQLRIFDNGQQILSPGMSGGGFNYSFSTTWSNVPAGVHSFSATVDGAYDSATSDNS
VVVTVVSTVVTGNIDSVSADGWISGWACSTYRTDSINVDLYLGGPYGTGTGIVRTLANQS
SEPGVASACKVGSGSFRFNIPLSEAQRLQYAGQKIYIHGISPVGAANNLIGNSGNLVVPT
PTPNAQFVSQSVNTAMQTATTQTVTLQFKNTGTRTWKTADAFKLGSQNPENNGTWAIARV
ALPADIAPGQTATFSFQIQAPPPGNFSFQWRMLQEGVTWFGDFSPNVVIAVSPPPPVVST
YSSVDYDELGRVIARRDSAGNVKVSYTYDADNNITKVTDALNRSTTVDYDAFSRPIKSTD
PAGGITQYAYDTADNLVQVTDPRGKATTYTYDGFAQLWTQVSPDTGTASYTYDASGQRTG
MVRNDGSSLTYGYDGMGRLTSVSGGQQVRSYTYDSCTNGKGRLCGFSSAVGATTQTWTQF
TYTVDGLIATRDDAMQSTENLTAYNYDDSGRVTGISYPSGVSVGYAYSYGKLSAATVTAN
GTTSNLATGVNYQPLGPVAGWTVGNGLARGYGYDSDGRLTGISTGNASGVLQSLTYGFNA
ADEMTAATNGFNTGLSQQYAYDALSRLTKQTYGSGGQQLREYDASDNLTHNNGPWDEYPV
IDPASNRATSMGPHSYGYDARGNRSSYYFQYDASTATYTYDAFNRLSQYSRNVATTFGEP
NGPNGEAIYHPAGSWSYLYDAQDQRVGKSGPDGQTRYVYGAPGQLLAEYGPNGWKSYLWL
GGQLVGVYSTSAGLGFVHTDHLGRPELVTNGAQQTTWRAANYAFGRTVLQDAIGGLNIGF
PGQYLDAESGTWQNGFRDYDSRLGRYLQGDPVGQSGGVNTYIYARANPTHLVDILGLTPC
DISTALAFLREKFPTSRFPEIDVPSRVSTGDTIKSDNAWGLTTGLFRSVTIDSSFNKKLD
AKDADQLIWTLLHESMHRAESTTLYIMQASNPTYVAWHAQVDMWSFELSQTVADEFGLIR
AQCDCSKGGK