Protein Info for ABZR86_RS17395 in Dyella japonica UNC79MFTsu3.2

Annotation: sigma-54 dependent transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 PF20161: VpsR" amino acids 5 to 121 (117 residues), 36.4 bits, see alignment E=1e-12 PF00158: Sigma54_activat" amino acids 137 to 303 (167 residues), 231.4 bits, see alignment E=1.3e-72 PF14532: Sigma54_activ_2" amino acids 139 to 308 (170 residues), 73.5 bits, see alignment E=5.2e-24 PF07728: AAA_5" amino acids 160 to 276 (117 residues), 22.9 bits, see alignment E=1.9e-08 PF02954: HTH_8" amino acids 400 to 432 (33 residues), 28.1 bits, see alignment (E = 3.4e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JUK0 at UniProt or InterPro

Protein Sequence (445 amino acids)

>ABZR86_RS17395 sigma-54 dependent transcriptional regulator (Dyella japonica UNC79MFTsu3.2)
MAVSKAEAKRCVVWFGQPSATERMRLNRAGWYVRVADAAAVGGIGTRGGNSVVAVADLRD
ADAAGMTAMALVMDAHPGLPWLALMPAEMPVGEPALGGVIDTCVDVFTAPVDVDRLLDSL
GYLGGDIVAVEPDDLGITGHSKATRAVIASVRKYAPVDLPVLITGETGTGKEVAARALHS
LSRRAGRPFAAINCGALPPNLVQSELFGHERGAFTGANARRLGHFETAAGGTVFLDEVGD
LPADAQTSLLRFLQEGTLERVGSSQSITLDVRVLAATHVDLERAVEQGRFREDLYYRLNV
LRLHMPALREREDDVVLLAQHFLDAFREHHGSHARTFSSAARQAMRHFGWPGNVRELLNR
VQRAAVVAEDALITPEDLDLSHISQMPSGRATLGSARVAAEREAVISCLRECHFNVSECA
RRLKVSRVTIYRLCKKHGLALEQLR