Protein Info for ABZR86_RS17315 in Dyella japonica UNC79MFTsu3.2

Annotation: TIGR00341 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 transmembrane" amino acids 35 to 65 (31 residues), see Phobius details amino acids 86 to 108 (23 residues), see Phobius details amino acids 128 to 146 (19 residues), see Phobius details amino acids 153 to 178 (26 residues), see Phobius details amino acids 184 to 208 (25 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details TIGR00341: TIGR00341 family protein" amino acids 34 to 208 (175 residues), 101.2 bits, see alignment E=3.5e-33 PF04087: DUF389" amino acids 62 to 197 (136 residues), 132.3 bits, see alignment E=6.4e-43

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JSR2 at UniProt or InterPro

Protein Sequence (513 amino acids)

>ABZR86_RS17315 TIGR00341 family protein (Dyella japonica UNC79MFTsu3.2)
MLNAIRRWLKRQAATVDRTAIATDIDDNGELEGSYLFMCTMASGIATIGLLCNSVSVIIG
AMLVSPLMGPIVRLGLGIATLDIRRVFRALGTLLAGMGLALLVAILIVRLSPLRTPTPEI
LARTTPNLFDMIAATLSGLAGGYAMVRQRGGTIVGVAIATALMPPMAVVGFGIAVAQWRI
SQGALLLFATNFATIALSATLICTWYGFSGRGTRAAVAWQMLVGFAVMLPLGWPLAHALG
DIARQARLLGTVRNTLTATLSAQSVRVLDLQLDDEQRAVEITFAAQHYDGADDQRLRKAF
ASALPAGLELHLSPVIMADPTRTELSRSALSAGINPMTPAAGAIDAATEAAANFPLPLLS
SQIDAAARRLTLAVAPGADASLGSLKQMEDTLATRLAGWQVRIVPPPRPLPPVLFPRGSA
GLGEAQLATLGLIDWATQRWNARRLLVEGRASSDGHGTPELAAQRADAVRDWLEKHGLQA
TVGSSYPLPDQAQAEARQGIESFRSVFVQVLGQ