Protein Info for ABZR86_RS16820 in Dyella japonica UNC79MFTsu3.2

Annotation: YchJ family metal-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 133 PF17775: UPF0225" amino acids 33 to 128 (96 residues), 104 bits, see alignment E=3.2e-34

Best Hits

Swiss-Prot: 60% identical to Y4159_XANCP: UPF0225 protein XCC4159 (XCC4159) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K09858, SEC-C motif domain protein (inferred from 61% identity to gca:Galf_2542)

Predicted SEED Role

"UPF0225 protein YchJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (133 amino acids)

>ABZR86_RS16820 YchJ family metal-binding protein (Dyella japonica UNC79MFTsu3.2)
MQAIDTLTPCPCGNPAGYLRCCGPLHDGAAAATAEALMRSRYSAYVLKREDYLLATWHAS
TRPTTLKLGAQQPAPTWLGLSVKQHESEDDRATVEFVARLRYGGGKAQRMHEISRFVRED
GRWYYVDGTFPES