Protein Info for ABZR86_RS16500 in Dyella japonica UNC79MFTsu3.2

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1012 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 45 to 105 (61 residues), 33.1 bits, see alignment 6e-12 PF07715: Plug" amino acids 132 to 233 (102 residues), 39.3 bits, see alignment E=8.2e-14

Best Hits

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2H7X6 at UniProt or InterPro

Protein Sequence (1012 amino acids)

>ABZR86_RS16500 TonB-dependent receptor (Dyella japonica UNC79MFTsu3.2)
MTNSNLGSKRFLALAIGLCVSGGVLAQTTTGGLFGQAAAGQGDSVLIKSSTGLSREVPLD
DKGRYSIGQLPLGTYTVTLQRQGQAVETRDNITIKVGAGTEVSFTGAVAAKNLSGISVTA
NALPAIDVSSVDSRTVVTSDQLAKVPLGRSSEAIALLAPGVVNNGGSFSGPTGQSLVSFG
GSSASENAYYVNGFNTTDPLRGFGGLTLPYGAIDQQEVYTGGYGAAYGRSDGGVINVVGK
RGTNQWHFGTQVLWEPAFARARQRDRFYESGLPATPVAGNLYAPDSADRSWTTTVSAYAG
GPLVKDKLFLFVAGEYERQEGNTVNPVSGFLSGKPYVDYRQNDPRWYAKLDWNITDNHIL
EVTGASDKYNSSGTVYRYDYVNRAQGTRIGANDDIKSGGDVYTAKYTGYLTDALTLTAQY
GRMKTSDYDVPGGYDPSLTYVDGVTNQNPALNGGVGRGNSQTIVSLYDPGRGNRTTNTRI
DLTYKLGDHTLSAGIDNQTAKALNQGSNTSGPGYYWSYDQADPNTPLSTGLGVPATAGFP
NGAQGYYVVKTVANSLATVRSSQRAQYIEDKWQVSERWLLSIGLRNDQFRNYNADGQAYI
TQHKPQWAPRLGFSWDVNGDSSFKIYGNAGRYYLGLPLNPSLNAAGAYVSTSQYYTYSGI
AADGTPTGLTAMSGPVSANNAFGILPDPKTVSTQNLKSEYQDEFILGFTKTAGNDWVYGA
KLTQRVLRSAIDDYCDIDRVLAKATSLGYDVTTSSNPVSCWLFNPGQANTFTLVDTSGRY
VSVPLSNAEFGFPTLKRKYYGLETFLEHPFDGRWYGKLTYVFSRSYGNTEGQLRSDLYRE
SRGTGQTAVSTTQDWDNSWIMDYSNGAQNNDHKHQLKFFGYYQLTPEWLVSANLSLIAGA
PKPCLGYYGPDRADPAGYGNSYHFCFGDPSPPGSQGRLPWIRQLDLGVSYRPAFAANRLA
FGANVFNVLNEQRVLAIFPNGESSPNKANPLYGTPTARQQPRYVRLSVSYDY