Protein Info for ABZR86_RS16325 in Dyella japonica UNC79MFTsu3.2

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1042 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 387 to 411 (25 residues), see Phobius details amino acids 431 to 454 (24 residues), see Phobius details amino acids 465 to 490 (26 residues), see Phobius details amino acids 527 to 549 (23 residues), see Phobius details amino acids 858 to 878 (21 residues), see Phobius details amino acids 885 to 905 (21 residues), see Phobius details amino acids 911 to 937 (27 residues), see Phobius details amino acids 958 to 979 (22 residues), see Phobius details amino acids 992 to 1022 (31 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 1015 (1010 residues), 952.9 bits, see alignment E=1e-290

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 70% identity to smt:Smal_3691)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2H9T7 at UniProt or InterPro

Protein Sequence (1042 amino acids)

>ABZR86_RS16325 efflux RND transporter permease subunit (Dyella japonica UNC79MFTsu3.2)
MNISGPFIRRPIGTSLLAIGVFVLGLICYSLLGVAALPNMQFPVIFVQASQSGASAGTMA
STVAAPLERHLGQVTGIDTLRSNSSLGQTQVFMMFNVGRDLDAAARDVQAAINAAQNDLP
TGLNSPPSYQKANPNDDPIIAFALTSQTQSKRELFDVADSLLAQRLRQLEGVSSVDIQGA
ATPAIRVDVNLRALSAMGLTADQLRNALTAANVTSPQGFLSDGVTTTTVTANDSLHNADE
FAQLVIASHNGTPVHLSDVAKVYDGTQDAYQAAWFNGKPAILMYVYRQSNANIIATVDRV
KAEVPLLQAYLQPGTKLIPYFDGTPTIRASLHEVQATLLISLLMVMLTMALFLRRLAPTL
IATAAVPLSLAGAAVAMYVMGFTLNNLTLLALVISIGFVVDDAIVVIENIVRHIDQGMTR
FEAALAGAREIGFTIVSITASLVAVFIPLLFMGGITGMFFKEFTLTLVAAIAVSAVVSLT
LTTSLCGHFLNGHVHDRPVSRLGRALEGFQDGMLRIYTKALDFSLRHVLIFALSPLALIV
VTVLLFGAVKTSLFPMQDTGLIRGRATSGSTVSFQDSVARQQRLIDMLLKDPDVATVGSR
LGSSRQGAAGTFDIQLRTHAEGRKQDTVTVLARLSAKAARYPDLNVRLRPIQDLPSFGGG
GTSQGAQYQVSLQGDSSDELQEWLPKLVAELKKNPKLRDVGSDIDDAGLQQNIVIDRDKA
ARLGVGIGNIDGALYDSFGQRSVGVIYSDLNQYRVVINAVANQTATPEAINRIYVASNSG
AMIPLTAFARQEAGVAPTQVQHENQYSIMSLSFNLAPGISMGEALPIIQATASSMRLPGD
IRINLGGDFRRFQQSQSGMLLLLLGAVVVVYIVLGMLYESLIHPVTILSTLPAAGVGALL
ALWLTNTELSIIAQIALVLLIGIVKKNAIMMIDFALVAQREHGKPPLEAVREACVVRFRP
IMMTTMVAILAALPIAIGLGEGSELRRPLGIAMIGGLLFSQSLTLLSTPALYVIFSCLAG
HWKTWRARRRERSVRRIEARAS