Protein Info for ABZR86_RS15730 in Dyella japonica UNC79MFTsu3.2

Annotation: glycine--tRNA ligase subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 715 TIGR00211: glycine--tRNA ligase, beta subunit" amino acids 5 to 714 (710 residues), 723.8 bits, see alignment E=1.5e-221 PF02092: tRNA_synt_2f" amino acids 7 to 573 (567 residues), 665.5 bits, see alignment E=7.5e-204 PF05746: DALR_1" amino acids 603 to 704 (102 residues), 29.5 bits, see alignment E=7e-11

Best Hits

Swiss-Prot: 56% identical to SYGB_XANCB: Glycine--tRNA ligase beta subunit (glyS) from Xanthomonas campestris pv. campestris (strain B100)

Predicted SEED Role

"Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)" (EC 6.1.1.14)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.14

Use Curated BLAST to search for 6.1.1.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JBW7 at UniProt or InterPro

Protein Sequence (715 amino acids)

>ABZR86_RS15730 glycine--tRNA ligase subunit beta (Dyella japonica UNC79MFTsu3.2)
MSAAKSLLIELGTEELPPKALDELAAAFQRGICDGLAKRGVEAGLDLARTFASPRRLAVH
IPQVAAQQPEQAIERRGPAVNASLDAEGNPSKALQGFAQSCGVTVEQLEKLETDKGAWFV
FRAVKPGQPLAALLPEILDETLKGLPIPKPMRWGDHDYSFVRPAHWLVMLHGADIIEGEA
LGLKSGRKSRGHRFLHPHPIHVADADSWLDSMQAAKVLADPAERRQRIRAEVAKAAAQTG
GLPQLDDALLDEIANLTEWPSAIACTFERDFLAVPPEALVTTMETNQKFVPVFDANGKLT
EHFIGIANIESKDPAEIRKGYERVIRPRFADAKFFWDEDLKTPLAGYQDQLKNVTYQQSL
GSLWDKSVRVAELARIVANRVEVDAGQATRAAALSKCDLLTRMVGEFPELQGVMGRYYAT
HHGETAEVAAALDSYYQPRFAGDAIAAGKVGQVLAVAERLDTLAGIFAVGLKPSGNKDPF
ALRRAALGLARTLVEGGLELDLKASFTEALELIPDAALAAGLKPGKDGKAPTLDAGKRRA
ALVEELYDFVIERLRGYYAEQGFNGEQFEAVLAVAPASLADFDRRLRAVAEFGRRPEALS
LAAANKRVANILRKQAEEAGAPALPGAVDPAHFEADVERALASALAAARSDTAGALQAGD
YTAVLTRLAQLQAPVDAFFDGVLVNAENPAVRANRLALLGQLQAQFTAIADIARL