Protein Info for ABZR86_RS15725 in Dyella japonica UNC79MFTsu3.2

Annotation: glycine--tRNA ligase subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 TIGR00388: glycine--tRNA ligase, alpha subunit" amino acids 5 to 296 (292 residues), 535.7 bits, see alignment E=1.4e-165 PF02091: tRNA-synt_2e" amino acids 6 to 287 (282 residues), 496.5 bits, see alignment E=1e-153

Best Hits

Swiss-Prot: 84% identical to SYGA_XANCB: Glycine--tRNA ligase alpha subunit (glyQ) from Xanthomonas campestris pv. campestris (strain B100)

KEGG orthology group: K01878, glycyl-tRNA synthetase alpha chain [EC: 6.1.1.14] (inferred from 84% identity to psu:Psesu_2962)

MetaCyc: 76% identical to glycine--tRNA ligase subunit alpha (Escherichia coli K-12 substr. MG1655)
Glycine--tRNA ligase. [EC: 6.1.1.14]

Predicted SEED Role

"Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)" (EC 6.1.1.14)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.14

Use Curated BLAST to search for 6.1.1.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JAA7 at UniProt or InterPro

Protein Sequence (306 amino acids)

>ABZR86_RS15725 glycine--tRNA ligase subunit alpha (Dyella japonica UNC79MFTsu3.2)
MSARTFQDVIQTLNRYWAAQGCVLLQPLDTEVGAGTFHPATFLRSLGPEPWAAAYVQPSR
RPTDGRYGENPNRLQHYYQYQVVMKPNPDNILELYIGSLKELGLDPLVHDLRFVEDNWES
PTLGAWGLGWEVWLNGMEVTQFTYFQQAGGLECKPVTGEITYGLERLAMYLQNVDNVYDL
VWTESPHGTVTYGDVFHQNEVEQSTYNFQHANVPELLRWFDVCEGEANKLIAAGLPLPAY
EQVMKASHTFNLLDARRAISVTERQRYILRVRTLARAVAETYVAQREKLGFPGLKKNHKP
SKEQAA