Protein Info for ABZR86_RS15705 in Dyella japonica UNC79MFTsu3.2

Annotation: rhomboid family intramembrane serine protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 73 to 96 (24 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 133 to 152 (20 residues), see Phobius details amino acids 165 to 191 (27 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details PF01694: Rhomboid" amino acids 65 to 218 (154 residues), 107.7 bits, see alignment E=2.8e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2J9A0 at UniProt or InterPro

Protein Sequence (227 amino acids)

>ABZR86_RS15705 rhomboid family intramembrane serine protease (Dyella japonica UNC79MFTsu3.2)
MFVQVETRRRQGTPWVTMLLVLLCVLSFIGLAVLPPRQRLSLLLEWGTVPANIFDAKEPI
LAQLHDPSLLRLVTALFIHVAWLHVLGNMLFLVIFGLPSERTLGSTRFFLLFLLGGIVAN
LVGALSLAGVHSPIIGCSGAVSAVLGAYIALFPRERLGLVLPLGLYLEFVRVPAFLLIGI
WVLLQLLFSYAGPSYGAVVWWTHIAGFLFGVVYALLSRQAVVRRMRG