Protein Info for ABZR86_RS15445 in Dyella japonica UNC79MFTsu3.2

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 830 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF07715: Plug" amino acids 151 to 260 (110 residues), 41.2 bits, see alignment E=3.2e-14 PF00593: TonB_dep_Rec" amino acids 333 to 793 (461 residues), 140.5 bits, see alignment E=2.3e-44 PF14905: OMP_b-brl_3" amino acids 508 to 741 (234 residues), 31.2 bits, see alignment E=2e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2GMU9 at UniProt or InterPro

Protein Sequence (830 amino acids)

>ABZR86_RS15445 TonB-dependent receptor (Dyella japonica UNC79MFTsu3.2)
MRKTLALHIALLLGGTLSLSLHAQDHVAPAPAIAPMPLAQALDLLASRSGLQLVYSAEVA
ESVKSRGAAAGEPRAQLGQLLAGTGLDYRFVTPTTVTIVPAARTGNAPAADATASRGLPP
VDTDNATRELAPISVHANAVDTLAPSAAPLDAVQPTSVIDERFIRDGLRFNSNFDDIIKY
APSVTVTSPEGPGLGKNEGISIRGFQDGQFNITFDGIPFGDASDLHHTTSAYFNNHVLGQ
AEIDRGPGGGSTIGNATFGGTVGLRSRDPSDVPGITPYLTVGSWNTRAGGVAADEQLGAH
TKLFADISKEASDTYLKGTDDRREHAFIKTVSDLGPATTLTFVTSYNQEHQNTVQGATLD
EIAQYGWRYGLRDDPRLQSYQGYNRAAYYSSFTYVGLVTRLGDWDVDNKVYYNSFDHWSL
KASDATDNNPADNGVTFYDAKGKKVGKSATDVPGKQADNGFRAFGDVLRLARSLGPGTLQ
TGVWLERNLDERYQLPLDMTTGQRSGTKYGPVYNYQLKDRTDTAQPYVQYDWSITDQLTL
SPGLRYSSVTRSLDAALNKISPPVPSHAEATYSATLPSLSLHDRLSDEWSAYAQVARGFL
APPIDVIELNGTRGLDPELTTNYQIGTAYATRALTFGASLYYIDFKNFITETEVKTANGN
ESAYVNGGGAVYKGAEVEGTYALTPSLSLYGNASYNKATYKGSNVQVAATPKVTGALGLL
YSSQQGWFGSLMGKFVGHQYGLDNATDASGNDVFANGARIAGYTSWDAAFGFRGEHGPWG
AKGYSVSVDVNNLFNVHKLTGYAGTQSVSGTPLYFGLPGRGVFLDLSVKL