Protein Info for ABZR86_RS15070 in Dyella japonica UNC79MFTsu3.2

Annotation: ribokinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 PF00294: PfkB" amino acids 1 to 285 (285 residues), 229.2 bits, see alignment E=7.3e-72 TIGR02152: ribokinase" amino acids 4 to 290 (287 residues), 320.2 bits, see alignment E=6.9e-100 PF08543: Phos_pyr_kin" amino acids 161 to 267 (107 residues), 27.1 bits, see alignment E=2.7e-10

Best Hits

Swiss-Prot: 50% identical to RBSK_BACHD: Ribokinase (rbsK) from Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)

KEGG orthology group: K00852, ribokinase [EC: 2.7.1.15] (inferred from 56% identity to lhk:LHK_01710)

MetaCyc: 46% identical to ribokinase (Escherichia coli K-12 substr. MG1655)
Ribokinase. [EC: 2.7.1.15]

Predicted SEED Role

"Ribokinase (EC 2.7.1.15)" in subsystem D-ribose utilization or Deoxyribose and Deoxynucleoside Catabolism (EC 2.7.1.15)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.15

Use Curated BLAST to search for 2.7.1.15

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2K3P0 at UniProt or InterPro

Protein Sequence (297 amino acids)

>ABZR86_RS15070 ribokinase (Dyella japonica UNC79MFTsu3.2)
MARVVVVGSINMDLVTLAPRFAGPGETVLGERFLTVPGGKGANQAVAAARLGAEVTLIGA
LGDDTFGEQLREGLAREGIALDYVSRIDDCGSGTASITVAGGENEIIVVPAANARVTPAQ
VEAATDAIARADAVLVQMEIPLESVEATLRLGHRLGVPVILNPAPAQKLPTEWLKLARYV
TPNQHELAILLGADAQQDFRALMRQAPGPVVLTRGGEGAWYREDGEPTHQSGFAVDVVDT
TGAGDTFNGALAVFLHEGLPQAVRKACAAAALSVTRLGAQGGMPTRVELDAWLAGRP