Protein Info for ABZR86_RS15030 in Dyella japonica UNC79MFTsu3.2

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 992 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 38 to 106 (69 residues), 40 bits, see alignment 4.2e-14 PF07715: Plug" amino acids 138 to 234 (97 residues), 35.9 bits, see alignment E=9.6e-13

Best Hits

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2K0W0 at UniProt or InterPro

Protein Sequence (992 amino acids)

>ABZR86_RS15030 TonB-dependent receptor (Dyella japonica UNC79MFTsu3.2)
MGGPLRLSVLALALGGCFASTAALAQSNASGAIFGRTEAAPGTTVHIENPSTGISRDVAV
DADGRYRAGSLPVGVYKVAVQRNGQTVDSRDAVQVNVGTSTEVTFAAAAATGAGAKNLEG
VSVVASAVPAIDVSSVDTRTVLNAEQLRRLPMPQSVNAAVLLAPGAVNADARYGNAVSLG
GSSAAENQYYVNGFPVTNPLTGLGATSLPFNSIEQEQVFTGGYGAEYGRSTGGVVNIVTK
RGTNEWKGGMQVLYTPAGLRETEQPTYRPGDGAQITGRDKHSAKLWETTYAAYLGGALIK
DKLFFFGAAERIKSENDTYTLSKNTTRSYNTNKTNRWLAKVDWNITDNHIIELTGLSDTA
STYADQFVYDGVNDIQYNHKGWRSQKNQGTAGSSPGGQVYVGRYTGYITDNLTVDALYGK
ERTDHVDLTSGSSCTYFQDNRDSVPPSQRLQGCNISSGIAAPGAYDETNGWHLNLEYRLG
SHDLRAGVDHYNVTSLNGSDTSGGVGWFYYDNPASGVIETRGNLAVPPGHSGIVERYVFR
AIGQAKVRQQAQYLEDHWQVTDRWLAYVGLRNEQFENLNADNEVFAKQRHQLAPRLGLSW
DVMGDSSLKIYANAGRYHLAIPNNVAVRGASGSLYETQWGTYDGAVNTNGTPPNWQPIEN
VVYANGADGTPPDPRSISAQNLKAYYQDEYILGFDQQFADHWTFGAKVRYRKLRSIIDDW
CDDRPFIKWAADHGVNYADPSPACYIINPGQSNRFLIDLDGDGKLEDIKLSKNDIGLPEA
KRKYYALDAYLEHRFDGKWYGRLDYTFSRSYGNSEGLLKSDIGQLDPSVTQDWDHKELML
GSNGPEANDRTHQIRAYGYYQINPQWLVSANVLIQSGRPKNCIGVYPGDIPSEINYGASY
FYCKGQPTPRGSQGRLPWTYRLDLGVQYAPSFAKNNLTFSATVVNVFDKQTVQSINESGE
TGSGAPNLSYTQPLSYQTPRYIQFGARYDFSL