Protein Info for ABZR86_RS14900 in Dyella japonica UNC79MFTsu3.2

Annotation: sugar ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF01547: SBP_bac_1" amino acids 52 to 341 (290 residues), 138.3 bits, see alignment E=6e-44 PF13416: SBP_bac_8" amino acids 61 to 359 (299 residues), 111.8 bits, see alignment E=5.4e-36

Best Hits

KEGG orthology group: K10188, lactose/L-arabinose transport system substrate-binding protein (inferred from 58% identity to psu:Psesu_1284)

Predicted SEED Role

"Sugar ABC transporter, periplasmic sugar-binding protein USSDB1B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2ITH7 at UniProt or InterPro

Protein Sequence (438 amino acids)

>ABZR86_RS14900 sugar ABC transporter substrate-binding protein (Dyella japonica UNC79MFTsu3.2)
MSLRFRQRPGRPWRMLLHALAWTCAGVAAALATGCQRTDDTHVLTFWTVGREGEAVAKLL
PDFEREHPGLHVKVQQLPLTAAHQKLLTAIAGGSTPDLTQLGNTWIPELAALEALEPLDA
RVASSQVVRQDDYFANIWTTNRIGNTLYGVPWYVDTRLLFYRSDLLKQAGFDAPPRDWAQ
WRRALVALSHPERGSYGILLPTNEFEQLLVLALQQDEPLLRDDNRYGNFRSAGFKRALAF
YVETFRQHQAPAITNVEAGNPWTEFGRGVYAFYLSGPWNIGEFRKRLPASQQDDWSTTPL
PGEHGPGASNAGGSSLVIFRRSAHKDEAWQLIEFLSRPQIQQRFYDLLGDMPPRRSSWAG
GALRYDPKAQAFRDQLERVKSTPPIPEWERIVTEMQLVAAQAVHGDLSIDQAAAEIDRRA
DLILEKRRWILDRARPAP