Protein Info for ABZR86_RS13965 in Dyella japonica UNC79MFTsu3.2

Annotation: site-specific integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 PF00589: Phage_integrase" amino acids 103 to 259 (157 residues), 100.9 bits, see alignment E=3.5e-33

Best Hits

KEGG orthology group: None (inferred from 60% identity to xfm:Xfasm12_1092)

Predicted SEED Role

"Integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2EEB8 at UniProt or InterPro

Protein Sequence (277 amino acids)

>ABZR86_RS13965 site-specific integrase (Dyella japonica UNC79MFTsu3.2)
MHTWDDAARLWLVEKKHKADIDRDGQKLEWLKPYFGGKPLAQIDREAVMVVAWDKAKATS
PATANRLLALIRAIFRRACRVWEWIDRMPFAELFPESEGRVRWITSYQARALFSELPPHQ
LDMVLFALATGLRQGNVLRLDWSQVDMRRKLAWIHGDQAKGRRSFSVPLNEAALAVLRRC
KGSHPSRVFTYRGNPIAWANTKAWRKALKRAGIKNFRWHDLRHIWASWHVQHGTPLFVVQ
DLGAWRSSTMVRRYAHLAPSQYAAHAATIDGVIGNQT